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Detailed information on CNT30554480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001031, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102632Oryza glaberrimaOryza rufipogon75.3557.8897.78856forward
CNT30577015Oryza glaberrimaOryza barthii45.5110098.84517forward

Expression of CNT30554480

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MTLATCYPQTKKADKVFMIFQPYCPLSKKGKGGVIISPANVPRKLPPPHPYPRRCSSQQMNRCPSRCSRSSSPIDCLSMY*

>peptide 2 (44 aa)
MDMLWADFNVLMIEFQLMRSNIEVDSIKLTANAHQDSFLMLAAG*

>peptide 3 (37 aa)
MSTAARHMLWCHRNAIYFVATLWLNLCKTLSFSLWLNL

Sequence

>CNT30554480
CTAGTACTGTCTCGTTACGCTATTTAACATGATTTTACTGGATAGTTTTAGAATTGAGATCAGAGGGTTGCGATTAAAAACGAACTCGATAGAGAGGGAC
TTAAAGTGCACTTAATCACGGTGAGGCAGAGTGGAAGAGCGCGTTGCAAAGACCAAAACCCCATCTTTCTTCCCATGGCCGCCACCGCCATTGGCGCCGG
CGCCGGGCTCCTCAGCCGCTGGGCTCTACCCCACCACCGCCACTAGCGTCGGCGCCGGGCTCCTCAGCCGCTGGGCTCTACCCTCCCGTACACGGCGAGG
GTACGATCTCCACTCTTCCCGTGGTAAGTCTTAAAAACCCTAATCCTTATTTATTTTTTCCGTGCCCATCCGCCGCGACGACAACCGGCGCCGCCGCATC
TACGCCACCTGCGTGGTTCGCACGTCTCTTCTACACTTCGCAGACACCCCCTACCATCCTAGCCACCGCCCGGCGGCTTACTTATCCGTGATCTCGGTCG
GGAGATGGACATGTTGTGGGCTGATTTCAACGTCCTCATGATAGAGTTTCAGCTGATGAGATCTAACATTGAGGTGGACTCCATTAAGCTCACCGCAAAT
GCCCACCAGGATAGCTTCCTGATGCTCGCCGCCGGCTAACTGTCTTAATGACCTTAGCAACTTGTTATCCGCAGACCAAGAAGGCAGATAAAGTTTTCAT
GATTTTTCAACCATACTGCCCGCTGAGCAAGAAGGGGAAAGGAGGGGTGATCATTTCCCCTGCCAACGTACCAAGGAAACTGCCACCCCCACACCCATAT
CCAAGGAGGTGCTCAAGTCAGCAAATGAATAGGTGCCCGAGTAGGTGCTCGAGGTCGAGCTCACCTATAGATTGCTTGAGTATGTACTGAAGTTGTATAA
TATAGCTTGAGTATGTGCTGAAGTTGTATAATCTAGACTTTTGGAGTTTGTATGGTATTATGTTAAACCCAAAGCTAGCTTCCCTGTTGATCACTTGATT
GTGAACATTTATTCAATCATATGTCTACAGCAGCAAGGCATATGTTGTGGTGCCATCGCAATGCCATTTATTTTGTTGCAACTCTGTGGTTAAACTTGTG
TAAGACACTTTCATTTTCATTGTGGTTAAACTTGTG