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Detailed information on CNT30102515


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94AK6|SAG20_ARATH, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577021Oryza rufipogonOryza barthii48.5343.4998.09314forward

Expression of CNT30102515

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MWWLAGGPWYHHSRSGARRACAAVWSRALMASYSRITNHWFRCKSS

>peptide 2 (34 aa)
VQPYKRHYLNSSSCGSGESVTADEDEDADAVKVK*

>peptide 3 (37 aa)
MVPPLEVRGEEGVRGGVVSGVDGLVQPDHQPLVPLQVF

Sequence

>CNT30102515
GTTCAACCATACAAGAGACATTATTTGAACAGTAGTAGCTGCGGAAGCGGCGAGAGCGTCACCGCTGACGAAGACGAAGACGCAGACGCAGTAAAAGTGA
AGTAAAGGAGGCCACATTTCTTATTATATACTAATTGCAAATAATACTGTAATTACGCGTACTAGGTGTGATCGACGTATTGGAGCAGCAGAATGGAGGG
GATTGGTTGAAGCTGATTGATGGTAATCACAATAAGATGATGAATTAGAGGGCGAGGAGGAGGGCCGGGAGGTCGGGGCGGCGGCTCTGCCAGAGGCAGC
GGGTGGGCGGGAGGCGGGTGACGGTGAGATCGGTGTTGAGGTACTCGCGGAGGTGGGTGATGACCCTATCCCCATTGGGGCCGGGTCCCACGGTCCAAGC
GTGCACCCAGTAGCTGTCGTGGTAGCGGCCGGGAGGGCGTGGACGGAGAGCGGGCGGAAGCGGAAGGAGGAAGAGGAGGGCGAGGCGCAGCCGGTGAGGA
GGCGCATCATGTGGTGGCTGGCGGGTGGGCCATGGTACCACCACTCGAGGTCCGGGGCGAGGAGGGCGTGCGCGGCGGTGTGGTCTCGGGCGTTGATGGC
CTCGTACAGCCGGATCACCAACCACTGGTTCCGCTGCAAGTCTTCTT