« Back to Oryza barthii search


Detailed information on CNT30577021


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694850Oryza barthiiOryza sativa43.3570.8198.72313forward
CNT30102515Oryza barthiiOryza rufipogon41.2746.0697.99298forward

Expression of CNT30577021

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRMQSCFIIVQPYKRHYLNSSSCGSGESVTADEDADAVKVK*

>peptide 2 (88 aa)
MVPPLEVRGEEGVRGGVVSGVDGLVQPDHQPLVPLLLRLQVFFFFFLSLLLVQQQQLRLLILSRRQLLRCQPGDERDDESCTTRNQVKE

>peptide 3 (67 aa)
MWWLAGGPWYHHSRSGARRACAAVWSRALMASYSRITNHWFRCCSDSKSSSSSSCRCCWCSSSSCGC*

Sequence

>CNT30577021
TGAGTACTAAATAATACAGTAAGATGAGAATGCAAAGCTGCTTTATTATTGTTCAACCATACAAGAGACATTATTTGAACAGTAGTAGCTGCGGAAGCGG
CGAGAGCGTCACCGCTGACGAAGACGCAGACGCAGTAAAAGTGAAGTAAAGGAGGCCACATTTCTTATTATATACTAATTGCAAATAATACTGTAATTAC
GCGTACTAGGTGTGATCGACGTATTGGAGCAGCAGAATGGAGGGGATTGGTTGAAGCTGATTGATGGTAATCACAATAAGATGATGAATTAGAGGGCGAG
GAGGAGGGCCGGGAGGTCGGGGCGGCGGCTCTGCCAGAGGCAGCGGGTGGGCGGGAGGGCGTGGACGGAGAGCGGGCGGAAGCGGAAGGAGGAAGAGGAG
GGCGAGGCGCAGCCGGTGAGGAGGCGCATCATGTGGTGGCTGGCGGGTGGGCCATGGTACCACCACTCGAGGTCCGGGGCGAGGAGGGCGTGCGCGGCGG
TGTGGTCTCGGGCGTTGATGGCCTCGTACAGCCGGATCACCAACCACTGGTTCCGCTGCTGCTCCGACTCCAAGTCTTCTTCTTCTTCTTCTTGTCGTTG
TTGTTGGTGCAGCAGCAGCAGCTGCGGCTGCTGATCCTGTCGAGACGCCAGCTCCTGCGATGCCAGCCCGGGGATGAACGAGACGACGAGAGTTGCACAA
CAAGAAACCAAGTGAAGGAGGG