« Back to Oryza rufipogon search


Detailed information on CNT30101986


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 7e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671227Oryza rufipogonSetaria viridis35.1289.887.34229forward

Expression of CNT30101986

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MMSPAAIHTFLRLVPSTQMASQRPLPSIRVTWAYSCPSSLNTSSRLSSSASFLPLLRFFPPLPLFFGMAWLPAADPFFL*

>peptide 2 (46 aa)
PITHNHHVYQIKVTESNNYLTTSNHDKYLISQDETGNQTIHNSQPT*

Sequence

>CNT30101986
CCCAATTACGCATAACCATCATGTATACCAGATTAAAGTTACGGAATCCAACAATTATTTAACCACCTCAAACCATGACAAATATCTCATATCACAAGAT
GAAACCGGCAACCAAACAATCCATAACAGCCAGCCCACATAGTACCACACATAGCTATTAATTAGAACATAGCAGTAAATTGTAGCTGCGGAGAAAGAAG
AAAAGAGCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGTCGTGCTCGCCGTAGGCCTTGAGGAGGCGGGCCTCGTCGTTCATGTACT
TGAGGATGACGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGATGATGTCCCCGGCGGCGATCCACACCTTCTTGCGCTTGGTGCCGTCGAC
GCAGATGGCCTCGCAGCGGCCGTTGCCGAGCATCCGCGTCACCTGGGCGTACTCCTGCCCGTCCTCCTTGAACACCAGCTCGCGCTTGTCGTCGTCGGCC
TCGTTCTTACCCCTCTTGCGGTTCTTCCCTCCCTTACCCTTGTTCTTCGGCATGGCTTGGCTACCGGCGGCGGATCCCTTCTTCCTCTAGGCGTCGGCGG
AGATGCGAAACCCTCGCGTTTCGATCGAGATTGGGAGCGGTGGAGTTGCGGG