Detailed information on CNT30100626


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692223Oryza rufipogonOryza sativa55.2391.22100914forward
CNT30371521Oryza rufipogonOryza glumipatula100.0693.4599.521656forward
CNT30575860Oryza rufipogonOryza barthii97.110099.51607forward

Expression of CNT30100626

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MMISRRRRKVIRISRSDRRSKAFFHKRKYGALMGFPKREGKDQGDDMIKARN*

>peptide 2 (51 aa)
MLANYIYDRSVSIKKKKTRTEKEKIKKRSYLYLRRSYLPNRSFSKNEKELA*

>peptide 3 (52 aa)
MAPRATFVLLAWRHRRRRAAAEVPRPESAASPRELEAPGRPAIQKNVVHDDL*

>peptide 4 (41 aa)
MARASQLFFSIFQYFFSPTFGTSFSQPKKIILVGNNNRHIN*

>peptide 5 (43 aa)
MIDRFRSRRKKRELRRRKLRKEAIYICEDLIFLIDPSPRMKRS*

>peptide 6 (50 aa)
MHGSTRHLCIAGVAPSPASRRRRGAPAGIRRLSSGTRSSRKTGDPEERCP*

Sequence

>CNT30100626
ACCCACACATTCATATGATTAATAACTAGACCGTACCATACATCAATAATGCCACTTGTGTACATCACCATGTGGAGACAGAGTAGACCACATGTGTACG
TAGTAAATTTCTTGATACAAGGGTAATAATCCAAAAACTCATCACCCCATATCATCAAGAATACCCCAATTACACTACGTGCGTACTGCATACGCATGTA
CGCGACGTAAAACCCTAGATATCTACGTAGCTAGCATAACATATATCACACACACAAATTAAGCTTAGGCAACATCGTCGTCTTCATCGACCTGACTCAC
CATTGACGAGTGCAGAGCTAGCATCCATCCAAAACGCAACATCGCGGTCAAGCTACCGGACAACTCGACCGACCATGGCTCGAGCATCACAACTTTTCTT
CTCTATCTTCCAATATTTTTTTTCTCCTACTTTCGGTACGTCTTTTTCCCAACCAAAGAAAATAATTTTGGTGGGAAATAATAATAGACACATTAATTAG
ACAGGTCATGCACAGCTAGGATCCAAGGACACACCGTGTGATAGATCGATCGATCCTAGAGGCGGAGGACGCGGCGGAGGCGGCACCACCTTGTTGCCGG
CGGCGGGGGACGACGACGACGACGTGATCACGAACCTGGGCAGCGGCAGGCTGCTCGGCGGCGGCGCGAGCACGTGCAGCAGGTCCTGGACGAAGTTGCG
GGCCACCTCCTGCTCCAGGTCGTCCAGGGCCTCCGCCACCGCCGGCGCCGGCGGCAGCGGCGTTGCCCGCTCCAGCGGCTTCTTCTTCTGTGTTCCTCCC
TTCGTCGTCTCCGTCGACGGCGGCGGCCTCGACGGCTTCCTCCTCCTGTCCCTCTGGCGCGTCGACGGAGTACTAGCTCTGCCGCTGCGCGGCGGCTGCT
GCGGCGGAGGCGGGTACGGGAAAGTGGCGTACTTGGTGGCGGCGGGTGGGAGCGGCAGGAGAGGTGGCTGGTTGGACGGCAGGAGAGGCAGAGACGGCGA
CGAGTACAGCGGAGGCCTCGCGTACGGGAGCGCGGGTAGTGATGCATGGCTCCACGCGCCACCTTTGTATTGCTGGCGTGGCGCCATCGCCGGCGTCGCG
CCGCCGCCGAGGTGCCCCGGCCGGAATCCGCCGCCTCTCCTCGGGAACTCGAAGCTCCCGGAAGACCGGCGATCCAGAAGAACGTTGTCCATGATGATCT
CTAGGAGGAGACGAAAAGTAATTCGAATTTCTCGCTCAGATCGTCGATCTAAGGCGTTTTTCCACAAAAGGAAATATGGAGCCTTGATGGGATTTCCAAA
GAGAGAAGGAAAAGATCAAGGGGACGATATGATCAAAGCTCGAAATTAAATTATATCGAACTTGTGTCTGTGTATCAGTTTTTGCATGAAATTTGCAAGA
AGTAATTAATTAACTAGATCCTTGGGATTAAAAACAACAAGGATGCTAGCTAACTATATATATGATCGATCGGTTTCGATCAAGAAGAAAAAAACGAGAA
CTGAGAAGGAGAAAATTAAGAAAAGAAGCTATCTATATTTGCGAAGATCTTATCTTCCTAATCGATCCTTCTCCAAGAATGAAAAGGAGCTAGCTTGATC
TAGCTAAGGCAGAGAGGGAATAGCCATGCACTAAGCCCACCCTCGCCTCCGGGCT