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Detailed information on CNT3099999

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30689987	Oryza rufipogon	Oryza sativa	42.22	64.47	100	323	forward
CNT30552282	Oryza rufipogon	Oryza glaberrima	27.97	37.81	100	214	forward
CNT30369445	Oryza rufipogon	Oryza glumipatula	26.67	34	99.51	204	forward
CNT30574614	Oryza rufipogon	Oryza barthii	27.97	36.58	100	214	forward

Expression of CNT3099999

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MQRRALHRAHYPRSSGDAAGDGEAEPRDAAAGHAAERRHRAPEAVERRERRRLHHRVLALRRRRRRRLDVPRLRRADHRQHQHRRHRHHLARLLHL*

>peptide 2 (88 aa)
MLLPGMPPNAGTALPKRSNGGNVVGCTTVSLLSAAAAAAALMFLASAAPTTASTSTAATAIILLDFSISSSISLAKAKLSSSVQAAAAA

Sequence

>CNT3099999
CTCCACATTTCTAAAATTTATCTGAAACGGAGAGATGTGATGTGACACACCAGAAATGCTTATGTTTTGAAGCAGAGATAGTAATATATATAGCCATAGT
AATATATATAGCCATCACCATACAATAACACAATAATGATCACATTTAGCATTATTCATGCCTCGAGCTCGAAACAGTGGTAGTACTACTACATGATCAC
GAACTTAATTAAAACACAAAATATAAGAAGGGACCTAATTAAAACAAACAAACACAACCAACCAACAAACAGATAGAATAATCCTCCTCCAAATGCATGT
AAAGAAAAGAGATAGAAGAGACACTACTCATAATAGAACGCTAGCTAGACACAGTGCAAGCTAACTGCACATATGAAGATATAACGCGCGCGCGTCATAT
AGCCATCCATATTGCATGCAACGCCGTGCGCTACATAGAGCACATTACCCGCGCAGCAGCGGCGACGCCGCCGGCGACGGCGAGGCTGAACCCCGGGATG
CTGCTGCCGGGCATGCCGCCGAACGCCGGCACCGCGCTCCCGAAGCGGTCGAACGGCGGGAACGTCGTCGGCTGCACCACCGTGTCCTTGCTCTCCGCCG
CCGCCGCCGCCGCCGCCTTGATGTTCCTCGCCTCCGCCGCGCCGACCACCGCCAGCACCAGCACCGCCGCCACCGCCATCATCTTGCTCGACTTCTCCAT
CTCTAGCTCGATCTCTCTTGCAAAAGCTAAGCTAAGCTCGAGTGTGCAAGCTGCTGCTGCTGCTG