CANTATAdb - search

Detailed information on CNT3099993

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30338809	Oryza rufipogon	Eragrostis tef	85.62	23.23	82.4	500	forward
CNT30370968	Oryza rufipogon	Oryza glumipatula	55.65	81.86	94.77	325	forward

Expression of CNT3099993

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKAIRCKWARPRGDGTLQNGIRADSRGFTGACVAVAQAWCAWLV*

>peptide 2 (55 aa)
ATSFPEANLQRTPGLSVLGLEQFGMGDRPGYSSRVHTSEDKVVQKRYVLVCEGSL*

>peptide 3 (66 aa)
MVSEPTLAVSRARVSQLRRHGAHGWCRPGVVTQHGTCAGTGHMDVAKRGRSWPRVDRRGRRSLLRG*

>peptide 4 (44 aa)
MVRMAGVDREWLHSMAHALALDTWTWPREDVPGLGLIDGGVDLS*

Sequence

>CNT3099993
TTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTACTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGATATTCTTC
CCGGGTGCACACGAGTGAGGACAAAGTTGTGCAGAAAAGATATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGTGGGCC
CGGCCTAGGGGAGACGGGACGTTACAAAATGGTATCAGAGCCGACTCTCGCGGTTTCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTGCGCATGGC
TGGTGTAGACCGGGAGTGGTTACACAGCATGGCACATGCGCTGGCACTGGACACATGGACGTGGCCAAGAGAGGACGTTCCTGGCCTAGGGTTGATCGAC
GGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGTAACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTT
TCCGGAAGCCACAATTTGGAATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAG