CANTATAdb - search

Detailed information on CNT3099989

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690513	Oryza rufipogon	Oryza sativa	80.71	42.16	100	1251	forward
CNT30552455	Oryza rufipogon	Oryza glaberrima	71.48	94.22	99.28	1108	forward
CNT30595455	Oryza rufipogon	Oryza meridionalis	13.94	23.95	94.91	216	forward
CNT30574860	Oryza rufipogon	Oryza barthii	67.42	100	99.33	1045	forward

Expression of CNT3099989

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MYSPHVKAQQKSPPRPPSSSSLFFSFSPSLPHVLSSAAAS*

>peptide 2 (72 aa)
MSKPNRKAHLDHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPHPTPATPLAVAGLNQLLGSSLLCP*

>peptide 3 (35 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLLGSCSTGNT*

>peptide 4 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

Sequence

>CNT3099989
CGCAATGGGAGGCAAAGTGGTCGGTGTCACAAGGCATCGGTGAGGCCCAACAGTAAAAGTGGTTTGATGAAAATGACAACGTACTAGATCCCGTTGCAAC
GCACGGACATATTTGCTAGTTCAATAATACTCCTATGTACAGTCCACATGTCAAAGCCCAACAGAAAAGCCCACCTAGACCACCTTCTTCCTCTTCTCTC
TTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCGCTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACT
CCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTCACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGA
TGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTAC
CTCTGATGATTCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTAAT
TCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTT
ACTACTACTTGTTGATTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGG
TTCTATGATTCTAACTACTACTGCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTC
ACTGAATAGTTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGT
GCTTGATCGGTGGAGTAATGTGGGATTTCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCT
AAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGA
TGGTTCAGTTTATGATATGATATCCATAAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGA
CCTGTAGTGGTAAATTGTAAATAAAGAACTGTGATTTCTACTGTGCACATGTGTACCTCGCTGCATAACAACTAATCTACGCTATAGTTTAACTAAAACT
AAATTATCCCACTCCTCACCAGGTTTACTAACTAAAAATAAATCAATGATGCATATGGATATGACTTGATAAATAAATAACAAGAAAACGATCAAAAAAT
CATTTAAGATCTATAATAGAATAACAATCAACATATTTATAGGTCTTATC