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Detailed information on CNT3099986


BLAST search results

BLAST vs Swiss-Prot:
sp|Q943E9|HS17B_ORYSJ, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115714Oryza rufipogonOryza nivara42.7456.8398.47262forward

Expression of CNT3099986

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MAGCLSVTTLGTVTVSMPPSMDALTRSTTVAQLRSMWCDRWPFSSRRTLRSPVITSTFPSSTSTRTSSFFTPAGRSARNTYASAVSRLSMYVLANADVS

>peptide 2 (38 aa)
HKIRKGTKMEHVLHQANSMILLLAFLSYIEKAFHTKGN*

Sequence

>CNT3099986
ACACAAAATACGTAAGGGAACTAAGATGGAACATGTATTGCATCAAGCAAATAGTATGATTTTGCTACTAGCTTTCTTGTCTTACATCGAGAAAGCATTT
CACACCAAAGGTAATTAAACCAAAAGTACAGCAAGCACCTTACTCGCAAGCACTTTGAACTTATCATCGACGACAACGTATACATACGGATCGTTGGATT
GACTGACTGTCTGTGTGTGTGTGTGTGTGTTCATCGCATCACTACGGGCTGGCTTCGATTGCCTTCGCCTCGACAGCGGGTGCGACGACGGCGGGGACGG
GTGCGGCGGCGGCGATGGCGGGCTGCTTGTCAGTGACCACCTTGGGCACGGTGACGGTGAGCATGCCGCCGTCCATGGACGCCCTGACGAGGTCGACGAC
GGTGGCGCAGCTGCGCTCGATGTGGTGCGACCGCTGGCCCTTCTCCTCCCGCCGGACGCTGCGCTCGCCGGTGATCACCAGCACGTTCCCCTCGTCCACC
TCCACCCGCACCTCCTCCTTCTTCACCCCCGCCGGCAGGTCCGCCCGGAACACGTACGCCTCCGCCGTCTCCCGGCTCTCGATGTACGTGTTGGCGAACG
CCGACGTGTCGCT