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Detailed information on CNT3099978


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 2e-91

BLAST vs NONCODE:
NONBNAT004015, E-value = 1e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Oryza rufipogonSetaria viridis43.2142.1290.57350forward
CNT30522155Oryza rufipogonSetaria italica39.7536.6391.3322forward
CNT30641079Oryza rufipogonNymphaea colorata42.5946.4388.41345forward
CNT30516889Oryza rufipogonJuglans regia17.2823.1487.86140forward
CNT30377262Oryza rufipogonArabidopsis thaliana34.3247.687.05278forward
CNT30617295Oryza rufipogonSesamum indicum22.5944.6382.51183forward
CNT30728062Oryza rufipogonCorchorus capsularis34.6932.2683.27281forward
CNT30486254Oryza rufipogonOlea europaea22.3547.2687.85181forward
CNT30708222Oryza rufipogonGlycine max20.7441.6984.52168forward
CNT3092760Oryza rufipogonSolanum tuberosum32.2237.7281.61261forward
CNT30291318Oryza rufipogonTriticum aestivum31.3676.2890.16254forward
CNT30223001Oryza rufipogonHordeum vulgare19.3856.4792.36157forward
CNT30562825Oryza rufipogonActinidia chinensis32.7248.0185.28265forward
CNT30586804Oryza rufipogonMusa acuminata28.2729.6689.08229forward
CNT30511058Oryza rufipogonSolanum lycopersicum16.4255.6584.21133forward
CNT30553024Oryza rufipogonOryza glaberrima39.1422.289.91317forward
CNT30442409Oryza rufipogonAegilops tauschii37.6545.5287.54305forward
CNT30253208Oryza rufipogonAvena sativa37.6525.3786.56305forward
CNT30261872Oryza rufipogonBrassica rapa39.3836.0584.64319forward
CNT30614070Oryza rufipogonArabis alpina20.7412.1687.5168forward
CNT305432Oryza rufipogonZea mays21.647.6888.57175forward
CNT3041960Oryza rufipogonChlamydomonas reinhardtii13.732.5591.89111forward
CNT30608822Oryza rufipogonGossypium raimondii26.9132.5484.86218forward
CNT30209019Oryza rufipogonHelianthus annuus37.5336.4183.22304forward
CNT30627268Oryza rufipogonDaucus carota23.9515.6784.02194forward
CNT30681848Oryza rufipogonTriticum urartu43.2139.5588350forward
CNT30722476Oryza rufipogonTriticum spelta37.6545.5987.21305forward
CNT30341625Oryza rufipogonEragrostis tef35.829.7485.17290forward
CNT30361420Oryza rufipogonSorghum bicolor28.454.1293.48230forward
CNT30595966Oryza rufipogonOryza meridionalis29.2638.6692.41237forward
CNT30369370Oryza rufipogonOryza glumipatula57.4170.1498.92465forward
CNT30433292Oryza rufipogonPapaver somniferum24.0718.6181.03195forward
CNT30570854Oryza rufipogonVitis vinifera18.5274.6388150forward
CNT30706519Oryza rufipogonPrunus avium35.0634.2683.1284forward
CNT3033661Oryza rufipogonTheobroma cacao25.6810083.17208forward
CNT3054138Oryza rufipogonAmborella trichopoda25.0640.0481.77203forward
CNT3024644Oryza rufipogonPopulus trichocarpa38.0215.0684.74308forward
CNT30322043Oryza rufipogonAsparagus officinalis37.7836.5687.58306forward
CNT3036150Oryza rufipogonCucumis melo10.6225.5286.0586forward
CNT30330123Oryza rufipogonDioscorea rotundata26.1720.8387.74212forward
CNT30150001Oryza rufipogonBrachypodium distachyon9.3824.0589.4776forward
CNT30575530Oryza rufipogonOryza barthii40.6236.4389.67329forward
CNT30117026Oryza rufipogonOryza nivara34.0741.0786.59276forward
CNT30333708Oryza rufipogonCynara cardunculus34.9434.9484.45283forward

Expression of CNT3099978

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MARVSGAHHVLGVPHLLGELRDSEGAILLRATRGEWRKAHHEEVQARERDQVHGQLA

>peptide 2 (48 aa)
MFLASHICWVSSGTVRARYCCEPREVSGAKPTMKKCRRGKGIKFTASLR

>peptide 3 (42 aa)
MLLSASVNSISSMPSPVDAMERPRGGMSHTLDFTLLGIHSTK*

>peptide 4 (44 aa)
KILIDAARQETATGAIKASTRIQYTPQTYAIAYESKHGLVGETD*

>peptide 5 (31 aa)
ARFSSMQQDKRQQREQSKPVQESNTLPKHMR*

>peptide 6 (41 aa)
QDSHRCSKTRDSNGSNQSQYKNPIHSPNICDSIRIQTWSGR*

Sequence

>CNT3099978
GCAAGATTCTCATCGATGCAGCAAGACAAGAGACAGCAACGGGAGCAATCAAAGCCAGTACAAGAATCCAATACACTCCCCAAACATATGCGATAGCATA
CGAATCCAAACATGGTCTGGTAGGTGAAACGGATTAAAGTGGCAGTAGCATCAGCGGCGCTACGGACCACACAGCATTGTACTACTACTACATTACCCAA
AAGCACATAACCAATTAAGCATCATCATACCGAAACAATAATAAAGATTGCCCAAACGGTAGGACACAACAGGCGACACTCAAGATGGGATCCCAGGAGA
AACTCCGGCGAGATTACTCGTCTTCGGGGACCTGCTCCTCTTCGTCCTCGTAGTCGCCCTCCTCGTCGGCGGTGGCATCCTGGTACTGCTGGTACTCGGA
TACAAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCCTCGCCGGTGGACGCCATGGAGAGGCCGCGCGGCGGGATGTCGCAC
ACGCTGGACTTCACGTTGTTGGGGATCCACTCGACGAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCT
TGCCGCGGAACATGGCGGAGGCCGTGAGGTAGCGGCCATGGCGCGGGTCAGCGGCGCACATCATGTTCTTGGCGTCCCACATTTGCTGGGTGAGCTCAGG
GACAGTGAGGGCGCGATACTGCTGCGAGCCACGCGAGGTGAGTGGCGCAAAGCCCACCATGAAGAAGTGCAGGCGAGGGAAAGGGATCAAGTTCACGGCC
AGCTTGCGGA