Detailed information on CNT3099970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595602Oryza rufipogonOryza meridionalis53.1559.1998.5802forward
CNT30115766Oryza rufipogonOryza nivara85.2910099.611287forward

Expression of CNT3099970

Peptides detected in this lncRNA

>peptide 1 (95 aa)
RIISPSPASTGAVGGSAAPDGAAAHRRSPLVVVWCGSSGGDWPRPRTPESPSSSCRGPRALARVLGSGESSKPYGVVSARAAVPDAAQVARRASR*

>peptide 2 (71 aa)
AHHLTIPSIHRGRRGVGRPGRRRRPPPIAVGSGMVWQQRRRLASSSHAGVAEFILPRPAGPRSGARVGGIL*

>peptide 3 (73 aa)
MNSFQQRLAGRFRDPTTPHWSSLRKRGGVELLDFLGTRSRYNVVMLTPGIKTKWSICFMLQSCGMLIDLWIYG*

>peptide 4 (57 aa)
MGCMQGSGVRPLLGVERNPEEGSSMEDAVLGFIYREYTRFLSQSGSLGGGVPFRRPK*

>peptide 5 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 6 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 7 (44 aa)
MLPDCAEEEQLIHDDEFYQESSGDIDTPLPSSCRDGEGRPAKVV*

>peptide 8 (31 aa)
RASSHHPQHPQGPSGGRPPRTAPPPTADRRW*

>peptide 9 (41 aa)
MPALVFMPINRGRAQNKSFNRTLMFMFQCILTELWTCGYNL*

Sequence

>CNT3099970
CGCGCATCATCTCACCATCCCCAGCATCCACAGGGGCCGTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTGGT
ATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGG
TCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATAC
GAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCG
AGCTACTAGATTTTCTGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTCTATATGTTTTATGCTTCAGAGCTG
TGGCATGCTCATTGACTTATGGATCTATGGATAACTATTTTAGGTCAGCACCTAGCTGATGCTTCCAGACTGTGCCGAAGAAGAACAACTGATACATGAT
GATGAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCTTCTTGTCGAGATGGAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCT
ACATGGCCTAGCACCTGCCTAGTGGATACCTTCGCTGCATCGGCCGTTGAGGCATCATCTTCAACACCACCGGCGAAGCTGAGAAGTAGTGAGAACACTG
CATGGGTTGCATGCAGGGCAGCGGTGTCAGGCCATTGTTGGGGGTAGAGAGGAATCCAGAAGAAGGGTCCTCCATGGAAGATGCTGTGCTTGGTTTCATT
TATAGAGAGTACACGAGGTTTCTTTCACAAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCAGACCGAAATGAGATGTATTGGAGTACCTTGACGAAG
CATGGGCTGGAAAGTTGGTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCATTGTGCCT
GTCAGATTAGTGCTGTACTTGATGCATTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTATTTTCCTT
CTAAAGAGGGTGAGATCTTAGTAGAACTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGGTGCGAGACACTGGCATATGATCTGGCCTGAGC
CTTGTGTATGATGTTATCAGACTGGACTAGGCCAGGTGGGCCTTATGCCTGCTTTGGTCTTCATGCCAATAAACAGAGGGAGGGCCCAAAATAAGTCCTT
TAACAGGACACTGATGTTCATGTTCCAATGTATACTTACGGAGTTGTGGACTTGTGGTTATAACTTATAAGTTGCAAGGGACAGATATTGCCCAATACAT
TTCATGAGA