Detailed information on CNT3099968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690283Oryza rufipogonOryza sativa30.0745.88100178forward
CNT30116543Oryza rufipogonOryza nivara27.771.386.59164forward

Expression of CNT3099968

Peptides detected in this lncRNA

>peptide 1 (93 aa)
AFRTAADGCSGLSGVQMCPAAAATFRVGFSGVKNWSANAAAAFPIFCGVAIPAAVLALFDGGGGDCYQVHYMYSLFVTMSPKPPNRRRPPIRK*

>peptide 2 (80 aa)
LPHRRRRLLRPIRRPDVPCRRCNLPRRLLRRQELVGQRSRRLPHLLWGGDTGRRLGPLRWRRRRLLPSALHVFPFCYHEP*

>peptide 3 (78 aa)
PSAPPPTAAPAYPASRCALPPLQPSASASPASRTGRPTQPPPSPSSVGWRYRPPSWPSSMAAAATVTKCITCIPFLLP*

>peptide 4 (48 aa)
MKRMERERERERERGAAAGSPSPQRGRICRRGGSESMATAVARVPGGG*

Sequence

>CNT3099968
GCCTTCCGCACCGCCGCCGACGGCTGCTCCGGCCTATCCGGCGTCCAGATGTGCCCTGCCGCCGCTGCAACCTTCCGCGTCGGCTTCTCCGGCGTCAAGA
ACTGGTCGGCCAACGCAGCCGCCGCCTTCCCCATCTTCTGTGGGGTGGCGATACCGGCCGCCGTCTTGGCCCTCTTCGATGGCGGCGGCGGCGACTGTTA
CCAAGTGCATTACATGTATTCCCTTTTTGTTACCATGAGCCCTAAGCCGCCTAATCGCCGGCGTCCACCGATCCGGAAATGAAGAGGATGGAGAGGGAGA
GGGAGAGGGAGAGGGAGAGAGGGGCGGCTGCCGGCTCCCCCTCGCCTCAGAGGGGCCGGATCTGCCGGCGAGGAGGGAGCGAGAGTATGGCGACGGCAGT
GGCCCGCGTGCCGGGCGGCGGCTAGCACGGCAGCAGAGAGTGCGAGGAGGAGGTCGTCACCTGCAGGAAGAAGAGAATGAGGGGGGCGGCCATTGCTTGG
GCAGGAGAGAGAGCGGAGCGAGAGGAGGAGAGGAGGAAGAGGAATGGTGGCGGCTAGGGTTTGGGGAAGGGGGTTAGGGTTTTTTCTATTTT