Detailed information on CNT3099966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza rufipogonOryza sativa61.6947.2691.39871forward
CNT30552239Oryza rufipogonOryza glaberrima91.5778.0898.381293forward
CNT30596758Oryza rufipogonOryza meridionalis62.1891.4691.8878forward
CNT30369267Oryza rufipogonOryza glumipatula29.8252.8997.39421forward
CNT30106623Oryza rufipogonOryza longistaminata58.1475.690.86821forward
CNT30574647Oryza rufipogonOryza barthii91.5767.1798.141293forward
CNT30118029Oryza rufipogonOryza nivara62.3275.692.39880forward

Expression of CNT3099966

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MFKFTTLFMFLSSGSFCLRYSSTMRSYGSAIWIFIHDP*

>peptide 2 (33 aa)
MLHIHISLHVQVHDVIHVSFFRKFLFTLFKYHA*

>peptide 3 (59 aa)
KQKRKKNRGIAPASPSRHISCVLPPPPLFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 4 (78 aa)
KNKKEKKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

>peptide 5 (78 aa)
MDKLCCFVGFIYPIIIRSFLLSIVWFWYYVTYSYFTSCSSSRRYSCFFLPEVSVYVIQVPCVVMGVQFGSLFMILKKR*

Sequence

>CNT3099966
AAAAACAAAAAAGAAAAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGCCGCTGTTCCTGTCTCCGCC
GGCGCCGCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGATCAG
AGACGAGAAGGCTCCAGACAGCACAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGAAAAGGTATGAAGGGTTCCAACGTTGAAGGAGTTGAGTCGGAG
TATCGAAGGAGTTAAAGCAAGTACAAGACGGACTTGTGCGATGGATAAACTGTGTTGCTTTGTTGGTTTTATTTACCCAATTATTATTCGAAGCTTCCTA
TTATCAATTGTGTGGTTTTGGTATTATGTTACATATTCATATTTCACTTCATGTTCAAGTTCACGACGTTATTCATGTTTCTTTCTTCCGGAAGTTTCTG
TTTACGTTATTCAAGTACCATGCGTAGTTATGGGAGTGCAATTTGGATCTTTATTCATGATCCTTAAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGT
AATGCTAAGAGGATATTCACACCTGCTCGGGAGGGAACTACTATTTTTTGTCTCCTTCGTTTTAAATTAATGGAAAGCAAATGCTTCATATTGGTTTCTT
ATTGCACTAAACCTGCGTATGTTTTACTAGTTCAATATTGTACTTACTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGA
CATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCATAAGT
TTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTGAGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGTTA
TTGAGTTATCTTATAACTGACTGTCGTGGATGTCCGTAATTTTAGGAGGAGACTGCCGAAATTTCTAATAATTTTCGGAGTTAAGTGGTTTTTGAGTGTA
TTTTGGTATGGCACTCTAGGTACGTGGTTACCTGGGATGTTACATAGACACCAACCGAAGAAAAAGATCCCCTAACTACTTAATTCTATTAGAGAACCTC
GACCCGAAGTTGGCAAATAGATGCATAATTGTCGTGTCAAGTTTACGACATTCATCATTTATTAGCTTGATATCTTCATCATGTCTTTGTAATTGAACCC
ATCCTCGAAACTAATATGTTGCCCTGAAAAACACCTGCAAATAAGATTTTGATGGTGTTTTTATCAAAAACCATATCATTTCTATTAAGCCTAAGAGCCC
AACATACAGCGG