Detailed information on CNT3099965


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369441Oryza rufipogonOryza glumipatula96.6101.496.94653forward
CNT30107513Oryza rufipogonOryza longistaminata93.3497.6896.2631forward
CNT30577721Oryza rufipogonOryza barthii88.02100.5194.12595forward
CNT30115706Oryza rufipogonOryza nivara44.0810097.32298forward

Expression of CNT3099965

Peptides detected in this lncRNA

>peptide 1 (89 aa)
LACSFLSCKLSSQFTSFHQISSKHLRSIPACHTTAISSIQASHPSKYLAHAWVREGDREENRWSLLLVAATKQQPCFSSTWSLMQDFRA*

>peptide 2 (53 aa)
MWSKTLRLSVFPRSSKERIPVMSYASCVVIALLRVARAMSDLLQLGSCPVGLP*

>peptide 3 (53 aa)
CLFFSFLQAELPVHFFPSNLLQTLEIHPCMSHHSNLKYPSLPSIQISCTCMGS*

>peptide 4 (33 aa)
MHGFVREIGKKIGGACCWLQQQNNNHVFPPLGH*

>peptide 5 (29 aa)
MCCMLGSWTLLCVMYLLHFNPIMVLAMFIN

Sequence

>CNT3099965
CTTGCTTGTTCTTTTCTTTCTTGCAAGCTGAGCTCCCAGTTCACTTCTTTCCATCAAATCTCCTCCAAACACTTGAGATCCATCCCTGCATGTCACACCA
CAGCAATCTCAAGTATCCAAGCCTCCCATCCATCCAAATATCTTGCACATGCATGGGTTCGTGAGGGAGATCGGGAAGAAAATAGGTGGAGCTTGCTGCT
GGTTGCAGCAACAAAACAACAACCATGTTTTTCCTCCACTTGGTCATTGATGCAAGATTTTAGAGCATAGAACAGTTGCAACTCGTTTCTCTCCACTCCG
ACCATTACAACCCCCATCCCCCTCAGTTTACTCAGATTCGGAGAATTCGGAGTATGTGGAGCAAGACTCTGAGGTTGAGTGTGTTTCCACGCAGCAGCAA
GGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCTGAGGGTGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCG
GTTGGTTTGCCCTAGTGGGGTTGTGGCACCACCGATTTTATCTTTTGCCTATGAACTCTAATTGAGACTTCTGCTGCTATATTTATGTGTTGTATGTTGG
GATCTTGGACCCTATTATGTGTCATGTACCTGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTG