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Detailed information on CNT3099956

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672671	Oryza rufipogon	Setaria viridis	8.77	23.21	90.43	94	forward
CNT30520803	Oryza rufipogon	Setaria italica	8.77	21.22	91.49	94	forward
CNT30286278	Oryza rufipogon	Triticum aestivum	7.93	29.11	89.41	85	forward
CNT30552437	Oryza rufipogon	Oryza glaberrima	39.37	100	99.29	422	forward
CNT30241870	Oryza rufipogon	Avena sativa	7.74	20.85	89.16	83	forward
CNT30655558	Oryza rufipogon	Triticum dicoccoides	7.93	22.37	89.41	85	forward
CNT3015104	Oryza rufipogon	Zea mays	8.02	26.06	89.53	86	forward
CNT30595633	Oryza rufipogon	Oryza meridionalis	27.52	90.77	97.97	295	forward
CNT30369401	Oryza rufipogon	Oryza glumipatula	41.14	100	98.64	441	forward
CNT30574749	Oryza rufipogon	Oryza barthii	35.26	100	99.21	378	forward
CNT30115687	Oryza rufipogon	Oryza nivara	41.6	100.45	99.1	446	forward

Expression of CNT3099956

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MELLSCWPEEQWQPHPALFIATHTTPTDHQ*

>peptide 2 (29 aa)
MVSNFISKGYLRREGKEFLYDSTHTSILY*

>peptide 3 (45 aa)
MHHQYLSGAELLRAVIQFLNIRLSLFHLFLRSRLQKYISSQVNMN*

>peptide 4 (33 aa)
MATAPCPIYSHPHYTHGSSVVNAMHTPARERSM*

>peptide 5 (78 aa)
FLQIFVKFLCFEEGIKWCPILFQRAILEERGKNSYMIQLIQASSINYPLLQGGSTSSNGQGAFPLPVQQGSPVILQRQ*

Sequence

>CNT3099956
TTTTCTTCAAATTTTTGTTAAATTCCTCTGTTTCGAAGAAGGCATCAAATGGTGTCCAATTTTATTTCAAAGGGCTATCTTAGAAGAGAGGGGAAAGAAT
TCCTATATGATTCAACTCATACAAGCATCCTCTATTAATTATCCTTTGCTCCAGGGAGGTAGCACAAGCAGCAATGGTCAGGGTGCATTCCCTTTGCCTG
TCCAACAGGGATCCCCTGTAATACTGCAGAGGCAGTAGCAACCGTTATACCGCAGAGGATATGCATCATCAATACCTGTCTGGCGCTGAACTTTTGCGTG
CAGTAATTCAGTTTCTCAATATTAGGCTCAGCTTGTTTCACTTGTTTTTGAGATCGAGGTTACAGAAGTATATAAGCAGCCAAGTTAATATGAATTAATA
AGATGGTAGGATTAGAATTACGTACTCTCTCGATCATATATAGCCTCTGCTTGCATGCAGCAGGAGTATAGTATATAGTTAAGACAAAGAAAATGTATAT
AAATAAGATTTTGCGATTAAGTAAGGAATTTTATTTAGGGGCCAGGCGGCAACATGACATACATGAGACGCTAAGGTAGCTAGTACATGGCATATGTAGT
GGTACTGGTAGCTCGTTGATGAGGTGATGAATTGGATGGAGATAAGTTTCTTCTAGTTGCAGTTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCA
GCTGGAGCCGCATCCGCAGTTGCCACCGCAGCACGACATGGTGATGATGATGAGAGCTTCTTCTTCCTTCTCTGGCCTTGTCGGCAACTAGCTGCTGCTT
ACTTGTATGGAGCTTCTCAGTTGCTGGCCTGAGGAGCAATGGCAACCGCACCCTGCCCTATTTATAGCCACCCACACTACACCCACGGATCATCAGTAGT
GAATGCAATGCATACGCCCGCGCGAGAGAGATCGATGTAGGAGTAGCAAGCATCTAACTGCAGTTGCAGAATAATCAACAGTAGTAAAAAGAAGAAAAAA
CAATACTCAGTAGTAGCTAGATCGACCACTAGAATGGATGGGATTGGAGATGCCGCGCGCACTAGATAGCGA