« Back to Oryza rufipogon search


Detailed information on CNT3099938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690617Oryza rufipogonOryza sativa33.329.3999.72353forward
CNT30522968Oryza rufipogonSetaria italica23.2118.392.28246forward
CNT30293057Oryza rufipogonTriticum aestivum19.8124.9786.67210forward
CNT30437732Oryza rufipogonAegilops tauschii19.2529.6988.24204forward
CNT30247924Oryza rufipogonAvena sativa25.8517.7586.13274forward
CNT30455685Oryza rufipogonSaccharum spontaneum26.4219.2390.71280forward
CNT30135479Oryza rufipogonLolium perenne26.720.3288.69283forward
CNT3014485Oryza rufipogonZea mays8.6844.2390.2292forward
CNT30680887Oryza rufipogonTriticum urartu8.6832.1784.7892forward
CNT30339116Oryza rufipogonEragrostis tef16.0423.8488.24170forward
CNT30364121Oryza rufipogonSorghum bicolor16.1325.9991.81171forward
CNT30580297Oryza rufipogonEchinochloa crusgalli26.720.7690.81283forward

Expression of CNT3099938

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MWTSPTSRSPRARSARRRTWREPAPEAGTVNRSGAAFHAGLRPPARSVAIR

>peptide 2 (35 aa)
MASPMRRPPSAPPSSPAPSPIPKLFFFAGFTACCW*

>peptide 3 (98 aa)
MARRCSAPRRLGTPSPAHPPSPAYYFRSPAGSRREVGKPSMARFPCPVVGRRTGVGRPRRRRRRAGRLAPVELGRTRPEERHQGRSRIGLPRRSCRRN*

Sequence

>CNT3099938
TGAAAGATTCCGATTAGGCGCTTAATTCATTCAAAAAAACAAAAACAAAAAAACAACAGTTGACTCATATTTGTACTCCATCACATAGCTTCACCACATA
TATATGGTGTCAATTAAACTCCTATTTACATCATCCATAATTTGGTCCTGGCAGTAAACAAAATTCAAAACAAAAACCAATACGAGATTATACGAAGATC
ACCCATTGCATCGATCTGCGTCATCTAGAAATCGAAGCCACCGCCGTCGTCGAACCCTGCGTCGTAGCCGGCGTCATACGCCGACGCGTCGGAGATGGCG
TCTCCGATGAGGAGGCCGCCGAGCGCGCCGCCGAGCAGCCCGGCTCCGAGTCCCATCCCGAAGTTGTTCTTCTTCGCCGGCTTCACGGCCTGCTGCTGGT
AGCCGCCGTACCCAGCCTGCGGCGGGTAGCCGTAGGCGCCCCCCGCGGCGGCGGCGGCTGGGCCGGGTACCCGTAGCCGTACTGCGGCGGTGGCGCCGTG
CCGTATGGCGCGGCGGTGCTCGGCCCCGCGGCGGCTGGGTACGCCGTCACCGGCTCACCCGCCTTCGCCGGCTTACTACTTCCGGTCGCCGGCGGGTAGC
CGGCGGGAGGTGGGTAAGCCGTCGATGGCTCGTTTCCCTTGCCCGGTGGTGGGTAGGCGGACTGGGGTGGGTAGGCCGCGGCGGCGGCGGCGGAGGGCGG
GTAGGCTGGCGCCGGTGGAGCTTGGCCGTACGCGACCGGAGGAGAGGCACCAGGGTAGGAGCCGGATTGGGTTACCTCGCCGATCTTGTAGGAGAAATTG
AGGACGCCCTGTGGCTTCCCGGAGGAGATCTTGCGGACCTGGTAGGAGACGAACTTGGCGGGGACGGCGCCGTCGGGGGCGCCGGAGAGGAGCTCCGAGA
GGGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGACGTGGAGGGAACCCGCGCCGGAGGCCGGGACGGTGAACCG
GAGCGGGGCGGCGTTCCACGCCGGGTTGCGGCCACCGGCGCGGTCGGTGGCGATCCGCTG