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Detailed information on CNT3099937


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Oryza rufipogonOryza glaberrima44.2879.0799.67612forward
CNT30110001Oryza rufipogonOryza longistaminata53.1891.8897.28735forward
CNT30574602Oryza rufipogonOryza barthii52.662.3599.72727forward

Expression of CNT3099937

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLRQVFSLLLSFAGGVEDDASTADAAKVSTRQVLGHVGQLNNFGRSSFSISTRRWNYLLRHSLEASARC*

>peptide 2 (51 aa)
MSSPSYRSLTRCTPGYLSSIWYGGPRGHDAVRFRGFPRPEHPSEGPRAAAG*

>peptide 3 (43 aa)
MNSATPACEDEANLRRCCHTIPLPTAIGGGRRRRPGRPTPRRPL

>peptide 4 (33 aa)
MTQDLLRVITTKTNFPAHASSSVLTTSQLRRWC*

>peptide 5 (56 aa)
MTICYYEHGNDYDSPFHHLVLIPGVSMTTLYRLLVPYQCIKKMVCISMYELETRRN*

>peptide 6 (39 aa)
MNSKHGEIKNLIKLPLPENLVARRLHAFLGMTNVVWSDL*

>peptide 7 (34 aa)
MNISVLLKDLFWALPLFIGMKTKAGIRPTWPSPV*

Sequence

>CNT3099937
GGCAATATCTGTCCCTTGCAACTTATAAGTTATAACCACAAGTCCACAACTCCGTAAGTATACATTGGAACATGAACATCAGTGTCCTGTTAAAGGACTT
ATTTTGGGCCCTCCCTCTGTTTATTGGCATGAAGACCAAAGCAGGCATAAGGCCCACCTGGCCTAGTCCAGTCTGATAACATCATACACAAGGCTCAGGC
CAGATCATATGCCAGTGTCTCGCACCAATTACATTGTCAAACAGCAGGGCACCACAAGCAATAAAGTTCTACTAAGATCTCACCCTCTTTAGAAGGAAAA
TAATTTGTTCTGCAATCTACATATGGTTCTTGTATTTCATTTGGTTTCATGTATAAACGACAACAATGCATCAAGTACAGCACTAATCTGACAGGCACAA
TGCAAGACCAGCCAAACTGCACCTGCTAAGTAGGTCCATGACGCAAGATCTGCTCCGGGTGATCACCACCAAAACCAACTTTCCAGCCCATGCTTCGTCA
AGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTGAAGATGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTA
GGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGAATTACCTTCTTCGGCACAGTCTGGAAGCATCAGCTAGGTGCTGAC
CTAAAATAGTTATCCATAGATCCATAAGTCAATGAGCATGCCACAGCTCTGAAGCATAAAACATATAGACCTACACAAATACTTGTCAGAATTTATGAGT
TATGACAATATGCTACTATGAACATGGAAACGACTATGATTCTCCATTTCACCATTTGGTTTTGATTCCAGGAGTTAGCATGACGACATTATATCGACTT
CTTGTTCCCTATCAATGCATCAAAAAAATGGTTTGCATTTCCATGTATGAACTCGAAACACGGAGAAATTAAGAACCTAATAAAATTGCCATTACCAGAA
AATCTAGTAGCTCGACGCCTCCACGCTTTCTTAGGGATGACCAATGTGGTGTGGTCGGATCTCTGAACCTCCCCGCGAGCCTCTGCTGGAAGCTGTTCAT
GTCCTCCCCTTCGTATAGATCTCTAACGAGATGCACGCCGGGCTACTTGAGCAGCATCTGGTACGGCGGCCCTCGCGGACACGACGCCGTACGGTTTAGA
GGATTCCCCCGACCCGAGCACCCGAGCGAGGGCCCGCGGGCCGCGGCAGGATGAACTCGGCGACTCCGGCGTGCGAGGACGAGGCCAATCTCCGCCGCTG
CTGCCACACCATACCACTACCAACGGCGATCGGCGGTGGGCGGCGGCGCCGTCCGGGGCGGCCGACCCCCCGACGGCCCCTG