Detailed information on CNT3099917


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza rufipogonOryza glaberrima99.7199.7199.41681forward
CNT3066724Oryza rufipogonLeersia perrieri19.0344.5287.69130reverse complement
CNT30595465Oryza rufipogonOryza meridionalis83.0295.1395.24567forward
CNT30369297Oryza rufipogonOryza glumipatula91.6510099.36626forward
CNT30106043Oryza rufipogonOryza longistaminata42.1781.1397.57288forward
CNT30574627Oryza rufipogonOryza barthii85.65100.1799.66585forward
CNT30115788Oryza rufipogonOryza nivara93.4199.3899.06638forward

Expression of CNT3099917

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPAAPSKK*

>peptide 2 (36 aa)
MYVCCENKMIEILYSVMFILTSWLKFGNKLFLETKAL

>peptide 3 (35 aa)
LKTTDGPLSGWTPEPLIDPRSNQESQRIFRCQFGH*

Sequence

>CNT3099917
CTAAAAACCACAGATGGCCCTTTGAGTGGATGGACTCCAGAACCACTGATCGATCCAAGATCTAATCAAGAATCTCAGCGCATTTTCCGTTGTCAGTTCG
GCCATTAAGCCCCATATATAAGCCTCCTGATAATATCAGTAGGAGAAACAGGCCATTGTGGATATATACAAGCACAGAAGAACAAGTAAATATAATCGAC
AGAGAACTAAAGCCGACGAGGTCTCGACAGGCGAAATATGGATCCTGCAGAGAGAGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATAGG
CCGAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACAAGAACAAGCAAGCCAAGAAGCCCAAACCAGCTGCACCCAGCAAGAAGTGATAAACTTAAC
TGGCTGCCTGCCTCTACTACACAGTATGTATGCAAACCGAAAGACTGGCTAATTAGGGGGTTTAATCTTCAGGATTCAGTTCAGGTTTGAGCTGAACACT
GAAGAAGTGAAGAGTACTTGGATACAGTTAATTTTACCTGTTCAAACTTCAAACAGTCCTACAGGATGCCGGATGTATGTGTGTTGTGAGAATAAAATGA
TTGAGATACTATACTCTGTGATGTTCATATTGACCTCCTGGTTGAAATTTGGGAATAAATTATTTCTGGAAACAAAGGCATTA