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Detailed information on CNT3099916


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552138Oryza rufipogonOryza glaberrima100.2796.3299.291126forward
CNT30595515Oryza rufipogonOryza meridionalis81.2195.498.57912forward
CNT30110721Oryza rufipogonOryza longistaminata59.7573.8298.36671reverse complement
CNT30580641Oryza rufipogonEchinochloa crusgalli11.3127.5583.46127reverse complement

Expression of CNT3099916

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGKLCCSQTDDDPEFNLLGLLVAVVLALLLLMLCTPPRRRRCVVYPCY*

>peptide 2 (32 aa)
MLLGWNENKSEVGLYSIVNTEQYVPDVMVHVT*

>peptide 3 (30 aa)
MIWRTVCFCNFCVKTRKLQKRCLYCSSNRI*

>peptide 4 (37 aa)
MAAAAAVLRSSQMSRGDRGEATRHRQALKPGIGSDLF*

Sequence

>CNT3099916
TGGAAGGGCTAGACAGTGATGCCTCAACAACCAGCCAGCCCACATGATGCTTGAAAGCACCCCAAGATTCATAGCCAAAGTGTCATAGAATACAGAGACG
AGACGACCTCCATCCGGAGTCTTTCAGAGTCTTTCAGATTCAGAAAACCCACTACTGCCAAGAAGCCCTGCTTCTCTTCTACTTCCTCTCAAAGAAAGAG
ACCGAGAGAAGTTCATCTTGCAAGCCAAGAACTCTCGTCCTCTCCTTCTGAAGCGGGTGGCATGGGGAAGCTGTGTTGCAGCCAGACGGACGACGATCCG
GAGTTCAACCTGCTGGGGCTGCTCGTCGCCGTCGTCCTCGCGTTGCTGCTGCTGATGCTGTGCACGCCGCCGCGGCGCAGGCGCTGCGTGGTGTACCCCT
GCTACTAATGGCGGCGGCGGCGGCGGTGCTCCGATCCTCTCAGATGAGCAGAGGGGATCGAGGAGAAGCGACGAGGCATCGTCAAGCTTTAAAGCCAGGC
ATAGGTTCCGATCTTTTCTGACCGATTTGCATATGCTCAGTTTCCGAAATAATTTATGCTGAATTTCGAATTGTGATAGACTCGTTTCTGTTGCGAGTTG
TTAGAATTTTTATGTGCATACTGTTGATTTGCGGCCTGATGGAATATATGAAATGATTTGGAGAACCGTGTGCTTCTGCAACTTTTGTGTAAAAACCCGG
AAACTTCAGAAAAGGTGTTTGTATTGTAGTAGCAACCGTATCTGAACATCTTTCTGTTAAATCGGTCGAAACAAGCAGAATAGGATGCTGCTGGGATGGA
ATGAAAACAAATCGGAGGTAGGTTTATACTCCATTGTGAATACCGAGCAATATGTACCTGATGTAATGGTGCATGTAACATAGTACGATGTGAAGAGAAT
TAGAGGTGAGAGAAGAATAACGAACCTAGGGTGTGCATGATTTCAGTAAAGCACAGGTTCAGCAGATGCATGGGTCGTTGTGAGTTGGGGACCTGATCGA
TCTGGGGCAGGGAATGCAGCACAGCAGTAGGTGACAGAAGTAGGAACTTGCAGTAGTAGTTGGATGATGATGATTTGAGATGGGGAAACTTTTGTAAGCA
CTACATATCAACTAAATAGTCAT