Detailed information on CNT3099912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690383Oryza rufipogonOryza sativa57.3195.9799.69643forward
CNT30369283Oryza rufipogonOryza glumipatula23.7168.5698.87266forward
CNT30115817Oryza rufipogonOryza nivara44.3100.499.2497forward

Expression of CNT3099912

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MHHQYLSGAELLRAVIQFLNIRLSLFHLFLRSRLQKYISSQVNMN*

>peptide 2 (33 aa)
MATAPCPIYSHPHYTHGSSVVNAMHTPARERSM*

>peptide 3 (30 aa)
MELLSCWPEEQWQPHPALFIATHTTPTDHQ*

>peptide 4 (29 aa)
MVSNFISKGYLRREGKEFLYDSTHTSILY*

>peptide 5 (78 aa)
FLQIFVKFLCFEEGIKWCPILFQRAILEERGKNSYMIQLIQASSINYPLLQGGSTSSNGQGAFPLPVQQGSPVILQRQ*

Sequence

>CNT3099912
TTTTCTTCAAATTTTTGTTAAATTCCTCTGTTTCGAAGAAGGCATCAAATGGTGTCCAATTTTATTTCAAAGGGCTATCTTAGAAGAGAGGGGAAAGAAT
TCCTATATGATTCAACTCATACAAGCATCCTCTATTAATTATCCTTTGCTCCAGGGAGGTAGCACAAGCAGCAATGGTCAGGGTGCATTCCCTTTGCCTG
TCCAACAGGGATCCCCTGTAATACTGCAGAGGCAGTAGCAACCGTTATACCGCAGAGGATATGCATCATCAATACCTGTCTGGCGCTGAACTTTTGCGTG
CAGTAATTCAGTTTCTCAATATTAGGCTCAGCTTGTTTCACTTGTTTTTGAGATCGAGGTTACAGAAGTATATAAGCAGCCAAGTTAATATGAATTAATA
AGATGGTAGGATTAGAATTACGTACTCTCTCGATCATATATAGCCTCTGCTTGCATGCAGCAGGAGTATAGTATATAGTTAAGACAAAGAAAATGTATAT
AAATAAGATTTTGCGATTAAGTAAGGAATTTTATTTAGGGGCCAGGCGGCAACATGACATACATGAGACGCTAAGGTAGCTAGCTAGCTAGCTAGCAGCA
AATTAAGGACTTGCATGCAAGCTAGGTAGCTAGTACATGGCATATGTAGTGGTACTGGTAGCTCGTTGATGAGGTGATGAATTGGATGGAGATAAGTTTC
TTCTAGTTGCAGTTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCAGCTGGAGCCGCATCCGCAGTTGCCACCGCAGCACGACATGGTGATGATGA
TGAGAGCTTCTTCTTCCTTCTCTGGCCTTGTCGGCAACTAGCTGCTGCTTACTTGTATGGAGCTTCTCAGTTGCTGGCCTGAGGAGCAATGGCAACCGCA
CCCTGCCCTATTTATAGCCACCCACACTACACCCACGGATCATCAGTAGTGAATGCAATGCATACGCCCGCGCGAGAGAGATCGATGTAGGAGTAGCAAG
CATCTAACTGCAGTTGCAGAATAATCAACAGTAGTAAAAAGAAGAAAAAACAATACTCAGTAGTAGCTAGATCGACCACTAGAATGGATGGGATTGGAGA
TGCCGCGCGCACTAGATAGCGA