Detailed information on CNT3099908


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Oryza rufipogonSetaria viridis64.649.4498.31177forward
CNT30184864Oryza rufipogonSecale cereale101.0947.8497.47277forward
CNT30299935Oryza rufipogonTriticum aestivum101.0912.6397.47277forward
CNT30435868Oryza rufipogonAegilops tauschii101.0919.8797.47277forward
CNT30242955Oryza rufipogonAvena sativa10029.37100274forward
CNT30661249Oryza rufipogonTriticum dicoccoides101.0944.8297.47277forward
CNT30205681Oryza rufipogonHelianthus annuus19.7120.4598.1554forward
CNT30364089Oryza rufipogonSorghum bicolor79.5648.0293.12218forward
CNT30595740Oryza rufipogonOryza meridionalis44.5347.47100122reverse complement
CNT30108930Oryza rufipogonOryza longistaminata10011.71100274forward

Expression of CNT3099908

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MMEKPASSKRRLCCRSAPYGVVQSQQPFWGASIGNTGLMTGWGAQ*

>peptide 2 (47 aa)
LKEGKSTETPLVAASESGTRVFIKRNPKRFHSICCGLDDGKTSKQQA*

>peptide 3 (37 aa)
KGRKINRDPVSSGERERNKGFHQKKSEAVSFDLLWIG*

Sequence

>CNT3099908
CTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCGATTT
GTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGGAGTTGTACAAAGTCAGCAACCGTTTTGGG
GCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAA