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Detailed information on CNT3099896


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N8Z0|DRB1_ORYSJ, E-value = 3e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690490Oryza rufipogonOryza sativa28.91100100268forward

Expression of CNT3099896

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MYISAVCRLSNWKGISGAKGVIITICCKLTIQKKHITTIVQEFHIRKMKHTRSLIHRLTACQMHIRELTTIQK*

Sequence

>CNT3099896
TAGGCTGACTGCCACCCAAACATCGTCACTGAAAGGAAGAACGGTCGCGCCCTCCGGCAATACCAGGTCAGGACGGCGTGGATAGACCTGGACTCGGTTA
GTTAACAAGGAGCAGCCGCATCCAGTAGAACTGACAGTACTGGCTGAGGCTAAGGGGTCAGAGCCGCATCCACTAGAACTGACAGTACTGGTTGAGGCTA
CAGGGGCTGAGTAGGCATCTTCCAACGGTGTGAGCTCCGGAGACGAGTCCATTACTTCAAGCACGGTCTTTGGCTCTGGAAAGGCCGGTTTCTCATCTTT
GAACTCACAAGGTTGGATATGTACATCAGCGCAGTTTGTAGACTTAGCAATTGGAAGGGGATTAGTGGAGCCAAGGGAGTGATAATCACGATCTGCTGCA
AATTAACCATACAGAAAAAGCACATAACCACAATAGTCCAAGAGTTTCATATACGCAAAATGAAGCATACAAGATCACTGATTCACAGGCTCACAGCATG
CCAAATGCACATAAGAGAACTAACAACCATACAAAAGTAGAACAAAAGCAAAGGTAAATGATTTATATGTGTTTCGTGGCATGCAGAACTTGTTAACTAA
TACCATGACCAATTGCAGCAGGAATGCATGATCACTGAAGAAAAGCCACAGCAAAGCAGAAGAAATTAAGCTCATGCCAATGGCACAATAAAGAATATGG
GATGCATTCATGCATATACAACAATTCTAAAACCAGACACAGTACATTAGTACCTCCTAAATGAATAAGATTCACAATTAACTAAGTATGTAACTAGATG
TTGAATACTTGTATTGAAATATAACATTCTTAAACAGTACATCGAACCAGAAAATGGATTCAAAAGAAGACCCACACTAAGCTAAGTTTCTGCATGCCAA
TTATTTTAAGTGCAAATATAACATGAA