Detailed information on CNT3099874


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKA5|AT7_ORYSJ, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30245648Oryza rufipogonAvena sativa35.7548.8384.28439forward
CNT30106514Oryza rufipogonOryza longistaminata24.2788.9697.32298reverse complement
CNT30148488Oryza rufipogonBrachypodium distachyon10.14086.29124forward

Expression of CNT3099874

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MHQGPRQGPLDRAGRPNRHVIAANRPIESRLEHVERLDQRHLGRVPVEPRQTEGTDRRRLGWHHPPLPEPLDGLGGRHC*

>peptide 2 (38 aa)
LPLLSLSDRREHNSDNAVNVNTTIRRLLSNATQIQLNG*

>peptide 3 (70 aa)
AAFVPFGQKGTQFRQRRKRKHNNSKIVIKCNPNSIEWMNQKHPRFSGVELLIFRLTSPTPTPRSTHELPY*

>peptide 4 (57 aa)
MAKQRLTVVSGSNPAARVRLRHALAISTSNAEHLATPATPAAAACASALYWFLKWLM*

Sequence

>CNT3099874
CTGCCGCTTTTGTCCCTTTCGGACAGAAGGGAACACAATTCAGACAACGCCGTAAACGTAAACACAACAATTCGAAGATTGTTATCAAATGCAACCCAAA
TTCAATTGAATGGATGAACCAAAAACACCCCCGATTTTCAGGAGTTGAGCTGCTTATTTTCAGGCTTACATCACCCACACCCACACCACGCTCCACCCAC
GAGCTTCCGTATTAATAACTAATCCAATCCAATTCAGTTACCAACCCCCACTAATCACACAACGACCACCCATCTAATCATCAGTAGTAATCACCCCCAC
CTAATCACGCGACGCTAATCCACCCATCCTCCCGGCCTCCGGCGAGTCCAGGTTCGTCAGTGGCACGACGTGGGCCGGTGGGCCCCACCCGTAGTCCACC
TCGGCGAAGCCCAGCCGGGTCCAGTCCGACACCAGCAGCGTCCGGTAGTCGGAGGTGATCTGGTACGGGTCGACTCCGGGTCGCCGCCGGCCCACCGGGA
GAACTCCGACGGCATCCGCCGCTTCCCGTCCTTGATGATCTTCACCACCTCCGTCACCGACGAGCCCGCCACCTTCCCGGCGGGGGCGGAGACGCGCATG
ATGTAGTAGCAGTTGCCGTAGAACCCGGCGCCGCCGCGCGGGAGGGAGGCGTGGAGGAGGGGGCGCGCGTTCATGGCGAAGCAGAGGTTGACGGTGGTGT
CGGGCTCGAACCCCGCCGCGCGCGTCCGGCTCCGCCACGCCTTGGCGATCAGCACCTCGAACGCCGAGCACCTGGCGACGCCGGCGACGCCCGCGGCGGC
GGCGTGCGCCTCCGCGTTGTACTGGTTCTTGAAGTGGTTGATGTAGTCGGCGGAGATGTCGACGGCGAGCCGGCCCGCGAGGGGGTAGTAATGCACCAAG
GCCCTCGCCAAGGCCCGCTCGATCGTGCGGGCCGGCCCAACCGCCACGTCATCGCCGCCAATCGCCCTATCGAGAGCCGGCTTGAACACGTGGAGCGACT
CGATCAGCGCCATCTGGGTAGGGTACCGGTCGAGCCACGACAGACGGAGGGGACCGACCGGCGTCGGCTCGGCTGGCACCACCCGCCGCTGCCCGAGCCG
CTCGACGGACTTGGCGGCCGCCATTGTTAACAAAATGGTGTAGCTGAGAGAAATAACCAACTACGAAGACGAGAAGAGGGGTGGTTGTTGTTGCTCCTTG
CTAGCTCGTTGCTTTGCTTTGGTTTGAA