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Detailed information on CNT3099869


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107539Oryza rufipogonOryza longistaminata49.4312.9599.34303forward
CNT30550410Oryza rufipogonOryza brachyantha25.1239.0994.81154forward

Expression of CNT3099869

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQQQADGRFLRRTSVLPQAYMNHASSLYI*

>peptide 2 (96 aa)
THEHRRVEQPVSLRPEEAVQSTAAGEAKMDKSVLMMLMAAAAVILLWLPLVLPPLPPPPPFLLFIPVVMMLLLFSLVLVPSRNCTGIPQLQSVTSE*

>peptide 3 (45 aa)
MVDQYATAGRWPVPQENFCSTSSLYEPCLKPIYMNHGCEDWEEKK*

Sequence

>CNT3099869
CACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTC
CTGATGATGTTGATGGCGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGCCGCTACCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCG
TCGTGATGATGCTCCTTCTTTTCTCCCTGGTTCTTGTCCCGTCTAGAAACTGTACTGGCATCCCCCAACTTCAGTCAGTAACATCAGAATAAGAACGCCT
GATGGTCGATCAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCAGGAGAACTTCTGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATAT
ATGAACCATGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGCCT
GTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCACGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAG
GGTGAAGGCGTAG