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Detailed information on CNT3099852


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001117, E-value = 6e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578094Oryza rufipogonOryza barthii12.0333.3390.99111forward
CNT30117142Oryza rufipogonOryza nivara9.3220.8290.786forward

Expression of CNT3099852

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RAVCFVPLWGDARVSRFGSRGRGYRTQRATVS*

>peptide 2 (84 aa)
AVQYVLCLCGVMPVYLGLEAVAEGTEHRGQQCPSTRNFMDHNSRLESITAYTSIFFLTRPYFEAALRTRLLGKIVPKVLNLLAV*

>peptide 3 (62 aa)
MLSSSTSYSAVCPMSATMLSAAGCARSTSTERSSERFCFSVRSAGRMRASAWTARGAARPLRR

>peptide 4 (43 aa)
MVLTPVLFYVAAESAWDPRGPHMSACHVITLYFPFLFSLLRGG*

Sequence

>CNT3099852
GCCGTGCAGTATGTTTTGTGCCTTTGTGGGGTGATGCCCGTGTATCTCGGTTTGGAAGCCGTGGCAGAGGGTACAGAACACAGAGGGCAACAGTGTCCTA
GTACTCGAAACTTCATGGACCACAACAGTAGACTGGAGTCCATCACTGCATATACTAGCATTTTTTTTCTGACACGGCCTTATTTCGAAGCAGCTCTACG
TACAAGGCTACTAGGAAAAATTGTACCGAAGGTCCTCAACTTGTTAGCGGTATAAAAAACGTTCTCAAACAGCAAAACCATATATGCAGGGTCCCTTAAC
TATATAAAACCGGTCACCCGAAGTCTTTGATGGTTTTGACACCGGTTTTGTTCTACGTGGCGGCTGAGTCAGCGTGGGACCCACGTGGACCCCACATGTC
AGCGTGCCACGTCATCACCCTGTATTTCCCCTTTCTTTTTTCTCTTCTCCGCGGGGGGTAGAACGGAACAGGCGGCGGCGAGCGGTGCTGAGCAGCGGCC
GGCGAAGCAGAGTGGAGCAGAGGCGCGGAGCGCCGGTGGCGGCAGGCGGGTGAGCACGGTGGCCAGCGTCCTCCTCCTCCATCGCCGCATCGACGGTGTG
TGCCCTGCTTCTCCCGGTGGTCGTCGGCGTCCTCCTCGGCTCCTCCTCCTCCTCCGCCGCCGCATCCGCCGCGTCACCGGCACCGGCATCCTCTGGCCGG
CGGAGCTCGCCGCTCCGTTCAACTCGCACGCGATGCTCAGCTCCTCCACGAGCTACTCCGCCGTTTGCCCCATGAGCGCCACGATGCTTTCCGCCGCCGG
CTGCGCGCGGTCGACGAGCACGGAGAGGAGCAGTGAAAGGTTCTGCTTCAGCGTGCGGAGCGCCGGGCGGATGCGGGCGTCGGCATGGACAGCTCGAGGA
GCTGCTCGTCCATTGCGCCGTCG