Detailed information on CNT3099836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690531Oryza rufipogonOryza sativa47.4953.04100218forward
CNT30595547Oryza rufipogonOryza meridionalis20.727.3810095forward
CNT30574722Oryza rufipogonOryza barthii57.9542.9793.23266forward
CNT30115578Oryza rufipogonOryza nivara27.4523.03100126forward

Expression of CNT3099836

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAGRSAARR*

>peptide 2 (36 aa)
MMRRRRRSGARGADIYGWMASSSVGRRRGRAHHARA*

>peptide 3 (33 aa)
QIQASFDICTVMSVMFKMIQHKFDVKQMKLKGN*

>peptide 4 (57 aa)
MPPPPPADPPPGDDASSSSFRCTRSRYIWMDGVVVGRTTARSRASRAGVAAGEVGGAE

>peptide 5 (29 aa)
MDGWRRRRSDDGEVARITRGRSCGRGGRRG

Sequence

>CNT3099836
TCCAGATTCAGGCATCGTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAA
TTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAAACAAAAACAGTAGTAGTAGAGTGAGGC
CCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCG
CCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGA
CGGCGAGGTCGCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGGTGGGCGGCGCGGAG