Detailed information on CNT3099828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30603551Oryza rufipogonOryza punctata10047.7298.09418forward

Expression of CNT3099828

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVWPCQQVNGQPSSFAAAVRKASVSPEARR

>peptide 2 (29 aa)
MERFLRYRHTSYSTSSFHMLEHLMSAVAH*

>peptide 3 (46 aa)
FICKFSRKLEIDTTAEKDIPLLPRLPYGKIFTLQTYKLQHKQFSYA*

>peptide 4 (49 aa)
IHLQVQQETGNRYNSRKGYTSASPVTIWKDFYVTDIQVTAQAVFICLNI*

Sequence

>CNT3099828
TATTCATTTGCAAGTTCAGCAGGAAACTGGAAATAGATACAACAGCAGAAAAGGATATACCTCTGCTTCCCCGGTTACCATATGGAAAGATTTTTACGTT
ACAGACATACAAGTTACAGCACAAGCAGTTTTCATATGCTTGAACATCTAATGTCAGCGGTAGCACATTAACCAAAAGTAAAGTAAAAATCACATCTTGG
GAGCAAGCCCCGTATCATGCTTGGGAACATCAGCTAATATCAGTCTTAAATCACATCTCAGGAAACTGACCGGCAAGTCATCCTTTCCTACTCGCTGATC
CTACAGCAGCTGCTTGCAGTGACAGTCATGGTGTGGCCTTGTCAGCAAGTGAATGGGCAGCCGAGCTCCTTCGCCGCCGCGGTGAGGAAGGCGAGCGTCA
GCCCGGAGGCGCGGCGGC