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Detailed information on CNT3099818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690462Oryza rufipogonOryza sativa30.7847.59100257forward
CNT30555942Oryza rufipogonOryza glaberrima28.535.7499.58238forward
CNT30369360Oryza rufipogonOryza glumipatula42.2845.8499.72353forward
CNT30574577Oryza rufipogonOryza barthii30.7832.2999.61257forward
CNT30115572Oryza rufipogonOryza nivara49.9445.4298.8417forward

Expression of CNT3099818

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAGGGAPPPRRRGFCVY*

>peptide 2 (33 aa)
MASSSSPSSSSCSCCSPAAARRRRAAAASACTD*

Sequence

>CNT3099818
GAGACAGAAAGCATCCATTCTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTAGAGAGAGATCATTATTAGCATTCGATCT
GCTTCTTCGCCATCGAAGTAATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGGCTTCATGGGGAAGGTGTGCCTTCTCGTCATCGACGA
GAACCTCTTCAATGGCATCCTCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGGCGGCGGCGCGCCGCCGCCGCGCCGCCGCGGCTTCTGC
GTGTACTGACTGACCGGCCGGCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAAGCTTTTAATTTGTGTTTTTTTTTCTCCT
TTTTTTTTCTTTTTCTTTTGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGTAATTAATTAACGTGTTCTTGTGTAGAAA
TATATGTGAAGGATTTTCTGTTTGATCAGGGCATGTCTTGGAGGAGTTTGCAGTTCATAACTTTTTTTTTTGGTAAAAAAAAAAGTTGAGTTGTTGGTGG
CAAGTGGCAACGGTGGTCTCTCTGTAGAATTGTTGTGTAATTTGTATCAATATATATTGTATATAGTAACAACGGATATTTATTTGAGATTCATTGCATC
TTACAGGCTTATGGGTTAGTTACTTTGTATTGATTTCTTTGAATAATAGTGGTTTATGTGACCCAACTGTTAACGATAAAATTTGATTTTTTCCATCAAC
ACCAACATAAACCACTTCTCCTTCTGTACCAAAAT