Detailed information on CNT3099807


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ABC2|LRR1_ORYSI, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552167Oryza rufipogonOryza glaberrima28.7998.6399.65287forward
CNT30105740Oryza rufipogonOryza longistaminata16.5523.8893.94165forward
CNT30574695Oryza rufipogonOryza barthii37.0173.899.46369forward

Expression of CNT3099807

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MANPRPNPNPEKRNNTISTDFFLEGITFRIVMLMQPLDSGGPHKSLFPRNELLVNVKK*

>peptide 2 (48 aa)
ERRRRGAPASGGRSRSPGWRCVCDRRPGTRAIALLNRSSVAGSTPSRV*

>peptide 3 (89 aa)
SGGGAALRRAAAGVALPVGVVYVIEGQEPAPLLFSTGAALPDLRPPESEPLRILSVACLWGKVGYGGATCFLFTSDAKIVHLKLLIHFA*

>peptide 4 (29 aa)
MELAQRGSYVTYLSHELKQVPQQFLGCYH*

Sequence

>CNT3099807
GAGCGGCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAACCCGCGCCATTGCTC
TTCTCAACAGGAGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTCCGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAG
GAGCAACTTGCTTTCTATTTACTTCGGATGCTAAGATTGTTCATCTCAAATTGCTAATACATTTCGCATAAAGAAATTGCTAATACATGCCTCCAGATGC
CTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAA
TTTTTGTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCA
ATCCAGAAAAGAGGAACAACACAATATCTACGGATTTCTTCTTGGAAGGGATCACATTCAGAATTGTCATGTTGATGCAACCTTTAGATAGCGGAGGACC
ACACAAATCATTATTCCCCAGAAATGAGCTGTTGGTGAATGTCAAGAAATGAAGTGATTCAGCTGATTTGAAGATAGATCCAAAGCTTCCAGCTGCTTCA
GCCCACCAAGTTGAGATGGAATTGGCCCAGCGAGGAAGTTATGTGACATATTTATCCCATGAGTTAAAACAAGTTCCCCAACAATTTCTGGGATGCTACC
ATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATGTGAGTGAGGCTTTATATCTA
TATACTAGTCCTACACTTGGCACAGCATGATCCATGACCAATGATGTATTTGTGTCTATATGTAGCATCGACTCCAACTTCTTAAACCACTTGTCTT