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Detailed information on CNT3099794


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000877, E-value = 3e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369193Oryza rufipogonOryza glumipatula100.4897.0297.71043forward
CNT30574816Oryza rufipogonOryza barthii100.160.998.271039forward
CNT30115548Oryza rufipogonOryza nivara60.1298.8999.2624forward

Expression of CNT3099794

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTPEKFNLTRDDCLIGEEVI*

>peptide 2 (67 aa)
MPSKSSFDSILFRPLQRRERDLVYGSSGARSKRRRSRHRRRSERCRPSQAEPSRQRLLLEVLLKTPQ*

>peptide 3 (72 aa)
FLALFSASLSRHSSLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

Sequence

>CNT3099794
CTTTTCTCGCTCTCTTCTCCGCCAGTCTGAGTCGCCATTCTTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCA
CCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGCCGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCAT
GCCGAGCAAATCCTCTTTTGACTCCATCTTGTTTCGTCCACTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGC
CGCAGCCGACATCGTCGCCGTTCCGAGCGCTGTAGACCGAGCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAAAACCCCTCAAT
AATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCAGCTCGTC
GTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTA
ACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGTTGACTTTTTCCAGTTACAAGGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGA
CTGTTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGACAAGCTTCCGTTGTTCTCTCATGTGTCTATTTG
GCCGGTCGGCCTATGTAATTATTAAGTTGTTGTAAGTCTTAAGTTTCTTTCATCTTAGTTGTGTTTGCTATGTATAATCATGCTTAAGATGAAAGTGTGG
ATCTAGTGCACATCCTAAGAATTCACATGAGTATGAGTTAGAAATATTTGAGAGGTTGTAGATCTTTAGCCATTTTGTCAAGTCTAAATCTCCTGAATGT
GTAACACATCTGGTCGCCACCTTCGAGTGGTTTGACGG