CANTATAdb - search

Detailed information on CNT3099775

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30689937	Oryza rufipogon	Oryza sativa	34.59	32.4	99.43	174	forward

Expression of CNT3099775

Peptides detected in this lncRNA

>peptide 1 (61 aa)
EGFVHCESITRDKSKGLLIRMINQASLGRRKKNKYKVYFSQYILLVVPYGNRRRVQYKGYS*

>peptide 2 (73 aa)
MGEVRTPRRNQLRLSRTTASEEEEAGLPLPPRSAAAASSRRRKKRATLHMDTPTVASSPASSGRLRRRATALPR

Sequence

>CNT3099775
CGGAGGGATTTGTGCATTGCGAAAGTATCACACGAGACAAGTCTAAGGGCTTGTTAATCCGTATGATTAACCAGGCATCTCTTGGTAGGAGAAAAAAAAA
CAAATACAAAGTGTATTTTAGTCAGTATATTCTACTAGTAGTACCATACGGGAACAGGAGACGTGTACAATACAAGGGGTATAGCTAGCTTGAGAGTGGC
GCAGTGGCAGTGAACCAGGCGACGGCCGGGGCGACGAGGCGGGCGGCGCGCGGGAAGACGGCGTGGGCGGCGCCGGGGAGCATGGGGGAGGTGAGAACGC
CGAGGAGGAACCAGTTGAGGCTGAGTAGAACGACGGCGTCGGAGGAGGAGGAGGCCGGCCTGCCGCTGCCACCCCGGAGCGCGGCGGCGGCCTCCTCGCG
GAGGAGGAAGAAGCGCGCGACGCTGCACATGGACACGCCCACCGTGGCGAGCAGCCCCGCCAGCAGCGGCAGGCTCCGCCGCCGCGCCACCGCCTTGCCC
CGC