Detailed information on CNT3099767


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690165Oryza rufipogonOryza sativa90.295.5899.77865forward
CNT30576100Oryza rufipogonOryza barthii40.7710096.93391forward

Expression of CNT3099767

Peptides detected in this lncRNA

>peptide 1 (82 aa)
KKPREEALNFSVALILAAGREEEQLSYSSISQDRRERRRAHGTPERAPSAAAADIVVVPTTVDSRPNQAELSRQRLLLEVLL*

>peptide 2 (43 aa)
MKTHACQFDEWIEPLPSSRSSAPSPDHILHRCRCPDFPAPRSR*

>peptide 3 (29 aa)
RNRGRRLSTSPSPSSLPPAAKKNNYRTRQ*

>peptide 4 (63 aa)
ETEGGGSQLLRRPHPCRRPRRRTTIVLVNKPGSTGTPSCPRHSGARSKRCRSRHRRRSDHCRQ*

>peptide 5 (49 aa)
MHVNSMSGSSRCRLPGALHRRRTIFFTAAAVQTFPRLVQDDCLNGEEMI*

Sequence

>CNT3099767
AAGAAACCGAGGGAGGAGGCTCTCAACTTCTCCGTCGCCCTCATCCTTGCCGCCGGCCGCGAAGAAGAACAACTATCGTACTCGTCAATAAGCCAGGATC
GACGGGAACGCCGTCGTGCCCACGGCACTCCGGAGCGCGCTCCAAGCGCTGCCGCAGCCGACATCGTCGTCGTTCCGACCACTGTAGACAGTAGACCAAA
CCAAGCCGAGCTGTCGCGCCAACGTCTTCTCCTTGAAGTCTTACTCTAAAACCCTCAAAAATCCTAGGCAATGGCGCAGCAAGTGCGGAGATCGGCTACC
GTCTTCTTCACCTCCGGTCGCCGTCGCCATTGTCGATTCCGCCTCCTCCGGTGAGCCATTGTCCGATTCTTCGCGTATACACCATCCCTAGGACCTCACT
AACCCCATGAAAACACATGCATGTCAATTCGATGAGTGGATCGAGCCGTTGCCGTCTTCCCGGAGCTCTGCACCGTCGCCGGACCATATTCTTCACCGCT
GCCGCTGTCCAGACTTTCCCGCGCCTCGTTCAAGATGATTGCTTAAACGGTGAAGAAATGATTTAGGCGCTGACATTTTCCTGATTCAAGGTTTTAGACT
TAGTCTTTGAGTGATGCGGGTAATCGACGGCTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGACAGGCT
TCCGTTGTTCTATTATTTATTTGGCCGGTCGGCCAATGTAACTAAAGTAGATGTAGTTTATAATCGCTTTCATCTTATTTGTGTTTGCTATGTATAATCA
TGCTTGAGATGAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTTGAAGATCTTTAGCCATTT
TTGTCAAGTCTCCTGAATGTGTAACACATCTGGTCGCCGCCTTCGAGTGGTTTGACGGG