« Back to Oryza rufipogon search


Detailed information on CNT3099761


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690536Oryza rufipogonOryza sativa30.5836.0798.28233forward

Expression of CNT3099761

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NVLITWCMNRYYGKYRYMKMFVGRLLEGARLLL*

>peptide 2 (56 aa)
MYPCLIPFHFPITTVMQPNKNLTHPRLATIVPQFNAFPFFHNNSNVAHARLSAIAG*

Sequence

>CNT3099761
AGAACGTATTGATTACATGGTGTATGAATAGATACTATGGAAAATATCGGTATATGAAGATGTTTGTTGGCAGACTGCTTGAAGGTGCCAGACTTTTATT
GTGATTAAAATGCAGCATCTAAGAATGATTTACAACAGATGTTATATTATTGTAGAAAATAATTAGGAAAGTGAAGATATGCTATTCCGGAAGATAAGAA
AATAATTAGAAAAAAAAGCACTATTCAATAGGATTAACTAAGATCAAAAGATCTATAAAGCTGATGCTGCTAGAGATGAATCTAACTGGAAAAAATATGT
AGTTAATCCCAGATTAGCAACAAATATGTACCCCTGCTTAATACCTTTCCATTTTCCCATAACAACAGTAATGCAGCCCAACAAAAATCTAACTCATCCC
AGATTAGCAACAATAGTACCCCAGTTTAATGCCTTTCCATTTTTCCATAACAACAGTAATGTAGCTCATGCCAGATTATCAGCAATAGCTGGCTGACACT
TACCTAATGCAACTTTTCATGGCACATGTTTACCCTGAAAATAAGGAGCACAGCAAAGTAGTAGACATTCAGAGTAATAATAATTAAGAGCTATAGGATT
TCAACCATAAGTGCTCGTTCATAGTCTGGATTGCAGTTTTATGTAAAGCAAAAGGATTTTAAGAAGCAAACACCATATATATGACAGCAGTTTAGGATGC
ACCCTGTGAAGGGAAAAGGAACAATTTAGCTGGATGTGATATGAAGGTAAAGTTGGATATAG