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Detailed information on CNT3099742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692482Oryza rufipogonOryza sativa25.614.0289.86138forward
CNT30576162Oryza rufipogonOryza barthii70.1364.5198.15378forward

Expression of CNT3099742

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GPWRFIAPRRSLRFPPPDTSLPHAGILDDLPNGRLPSFCMESPTLV*

>peptide 2 (53 aa)
MADNRISLEEVAKYKSVITKEFRSEAKGYKFYNDFPFVDIFLKTRCIFRVTKR*

>peptide 3 (65 aa)
APGASLPLAGPFAFPRRTPRCPTPGFSMISPTAACPRFAWSRRPSSDLESESLPPLYFYSEIWNG*

Sequence

>CNT3099742
GGCCCCTGGCGCTTCATTGCCCCTCGCCGGTCCCTTCGCTTTCCCCCGCCGGACACCTCGCTGCCCCACGCCGGGATTCTCGATGATCTCCCCAACGGCC
GCCTGCCCTCGTTTTGCATGGAGTCGCCGACCCTCGTCTGATTTGGAATCGGAGTCGTTGCCGCCTCTCTATTTTTATTCAGAAATTTGGAATGGCTGAC
AATCGCATTAGTTTGGAGGAGGTTGCAAAGTATAAAAGTGTGATAACCAAGGAGTTTAGAAGCGAGGCAAAAGGATATAAGTTCTATAATGATTTTCCCT
TTGTTGATATATTCTTGAAAACTAGATGTATCTTTAGAGTTACAAAAAGGTGAGACTTCTTGTGATTTTGTAATTACTGTGTAAGTTCCCCATGCACTGT
TTTTCAACTTGGGCTTATATAATTTACATATGATGGATGTTAAATTCAATGTTTTCTAAAAATTATTACACAGTCTAACTGCATCATATATTTCCTATGT
TGCAGCAGACGAACAGTTGATATTGCCATCTCTGAATTC