CANTATAdb - search

Detailed information on CNT3099738

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 6e-106

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690199	Oryza rufipogon	Oryza sativa	99.43	99.54	98.27	869	forward
CNT30370810	Oryza rufipogon	Oryza glumipatula	61.33	95.89	96.83	536	forward
CNT30110252	Oryza rufipogon	Oryza longistaminata	32.27	99.3	98.58	282	forward
CNT30574622	Oryza rufipogon	Oryza barthii	82.84	100	97.51	724	forward

Expression of CNT3099738

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHGELREIEIGEESGGFSLHGCSSNMTLFPSIC*

>peptide 2 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCSVGLP*

>peptide 3 (30 aa)
MTLRPGCYHVSEVWWNLEKRGSENRNRFLR*

>peptide 4 (35 aa)
RKPLLLPPLSSSLLVLSFFPQAELSSHFSSPNPIQ*

>peptide 5 (44 aa)
RENPFFFLPFHLHCLFFLFFLKLSSHLTSPLQIPSNSPRSIPAC*

Sequence

>CNT3099738
AGAGAAAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTTTTCCTCAAGCTGAGCTCTCATCTCACTTCTCCTCTCCAAATCC
CATCCAATAGCCCAAGATCAATTCCTGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCCAACATCTTGCACATGCATGGAGAGT
TGAGAGAGATCGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCCATTTGCTAGGAGGTGGCTGC
AGCTCATCCGGTGTTAATCTCTTTTGATTTCGGTTGAAGCAGCCCTAGGCAACGTCTCTTGCCGTCAGCCCAAGACCTTGCTCCATCTCTTGCCATTAGC
CCGAGGCCTTAGCCTCGCATGACCCTACGTCCAGGTTGCTACCATGTGAGCGAAGTCTGGTGGAATTTGGAGAAAAGGGGGAGCGAAAATAGAAATCGAT
TTCTGAGATAGCTTTTGAGCTGAAAGAGATTCGGAGATTCCGGAGAGTAACGAGTCATATCCCGAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGG
ATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCTCGGTTGGTT
TGCCCTAGTGGAGTTGTGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGTCGTATGTTGAGACCTCG
GACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTG