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Detailed information on CNT3099736


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690397Oryza rufipogonOryza sativa28.4435.98100190forward
CNT30595620Oryza rufipogonOryza meridionalis32.9360.2798.18220forward

Expression of CNT3099736

Peptides detected in this lncRNA

>peptide 1 (53 aa)
VYRNHSTYIDVRTHIHWFGIRRAAAAAKLWVSNVYTCTYVHPCSSYCTVYIRT*

>peptide 2 (58 aa)
MPVPVPVTVAVPVAVLPAGGLVALVHGAGVVLRHCWSVSLLQLATSPIRWWCKGSSLLC

>peptide 3 (77 aa)
RLQKSQYIYRCTYTHTLVWNKARGRGGEIVGEQRIYVYVRTSLLILLYRIYTYVVASIYLVVRTYAWIINNLGVINN*

Sequence

>CNT3099736
CGTTTACAGAAATCACAGTACATATATAGATGTACGTACACACATACACTGGTTTGGAATAAGGCGCGCGGCCGCGGCGGCGAAATTGTGGGTGAGCAAC
GTATATACGTGTACGTACGTACATCCTTGCTCATCTTATTGTACCGTATATATACGTACGTAGTAGCCAGTATTTATTTAGTGGTACGTACGTACGCATG
GATTATTAATAATTTGGGGGTGATTAATAATTAATCAGTTGCAGTAGTAGCCCTGCTGCTGCGGCATCCTGGCGTAGCCGTACTGCTGCTCCTTGGCGCC
GTAGCTGGCCTGCTTCTGCTCGCGGTGCTCGTGGGCGCCGATCTCGCCGACGCGCTCGCGCTGCTTGTGCTCGCGCTCCTCCCGCTTGTAGTACTCCTGC
GAGTGCATGGAGTTGTTCCTCCTCCCACGGTCGATCTCGCCGCCCTCGCTGTAGTAGTCGTCGGTGTGGGACTCCACCCTCATGCCACCATGCCCGTGCC
CGTGCCCGTGACCGTGGCCGTGCCCGTGGCCGTGCTGCCTGCCGGTGGTCTCGTAGCACTCGTCCACGGTGCTGGAGTAGTACTCCGCCATTGTTGGTCG
GTTTCTCTCCTGCAGCTAGCTACTTCTCCGATCAGGTGGTGGTGCAAGGGAAGTTCTTTGCTTTGCTT