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Detailed information on CNT3099734


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43007|PLDA1_ORYSJ, E-value = 5e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523111Oryza rufipogonSetaria italica21.2332.1491.45152forward
CNT30375740Oryza rufipogonArabidopsis thaliana20.8123.2181.21149forward
CNT30183339Oryza rufipogonSecale cereale12.1524.9393.187forward
CNT30314174Oryza rufipogonCamelina sativa20.8168.0481.21149forward
CNT30134231Oryza rufipogonLolium perenne33.3889.1887.03239forward
CNT30719439Oryza rufipogonMalus domestica golden20.8121.6981.21149forward
CNT30477502Oryza rufipogonArabidopsis halleri19.4139.9481.29139forward
CNT30705730Oryza rufipogonPrunus avium20.8131.1183.89149forward
CNT3022274Oryza rufipogonPopulus trichocarpa16.223.8281.03116forward

Expression of CNT3099734

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHRYCTYYFMIHNCNNCYSEEILNNGHTISPPN*

>peptide 2 (35 aa)
MDLATGWLPGRQMVWLVPAHGDLRVPSAVHRPLVDV

>peptide 3 (65 aa)
MSQYFSAILFTFCTHSSIPRCSYHSAIRKPWIWPRAGCLVARWYGWYPPMAISESLAPSIDLWLMF

Sequence

>CNT3099734
CCACAAACTGCATCAAGAATCAAGTTCAGATGAACACACGGTTAACCAGTATCAACAACGCTAAACAGTAGTGCAAAGTACAATCATGCCAATTACTTAG
TAGTTCCCAACTTCCCATCTTACAAACGGCATCACAACTTCACAAGCATCATTGCATCCCCGATCTTCTTCCCAACTCAACCATGCACAGATACTGCACT
TATTACTTTATGATTCACAACTGTAACAACTGCTATTCTGAAGAAATTCTGAACAACGGCCATACCATCTCGCCACCAAACTGAAGAAGTACAGAAGGAC
TGACAGGAGAAGCCAGCAGATTGTAGTGTAGTGCTTCCTCGTCTATGAGGTGAGGATGGGGGGCATGTAATCCGACTTGGCGCCGAGGACGCGGGCCCGT
GTGTCAGGAAAGTACTCCATCCCGGGCAGCTCAGTCACCACACCATCGCTGGCGACGCCAATGGGGTAGCTGAGGAGGTGGCCAGGGAGGTCCTGCTGGA
GGTCGTCGCTGGAGTACATGTCCCAGTACTTCTCCGCGATCCTGTTCACCTTCTGCACACACTCCAGCATTCCCAGGTGCTCGTACCACAGCGCCATCCG
GAAGCCATGGATCTGGCCACGGGCTGGTTGCCTGGTCGCCAGATGGTATGGCTGGTACCCGCCCATGGCGATCTCAGAGTCCCTAGCGCCGTCCATCGAC
CTCTGGTTGATGTTTG