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Detailed information on CNT3099731


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690016Oryza rufipogonOryza sativa58.3510099.83580forward
CNT30552290Oryza rufipogonOryza glaberrima70.0210099.43696forward
CNT30595586Oryza rufipogonOryza meridionalis47.1810095.74469forward
CNT30369171Oryza rufipogonOryza glumipatula59.5610099.49592forward
CNT30603526Oryza rufipogonOryza punctata58.8510093.5585forward

Expression of CNT3099731

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VGCVPSRCTKGIPRLENSQGEIVHSKHLQAEQISNRSYSNW*

>peptide 2 (45 aa)
MQLLRWLPELARLKWKSEIRVEVYRGRKPILRQQPMGLLVDFAEH*

Sequence

>CNT3099731
CGTTGGGTGTGTTCCCAGTAGATGCACCAAAGGCATTCCAAGGCTGGAAAATAGTCAAGGAGAAATAGTCCATAGTAAACATTTGCAAGCAGAGCAAATC
TCTAACAGGTCATATTCCAACTGGTGAAATACCTGTGAGGTTTCTTTGGAGACAGGGGTCTTCACCTCTTCAGCATTTAAACTCCACTGATCCATCATAA
GCGGGTAACTTTGTGGAATCAAAGCATTTGGTGGCGAAGTTGGCAACATTGACTGATTAGTTCCTTTAGCAAGACTCTCACTTGGAGGGAATGCAGCTAT
TGCGGTGGCTACCTGAGCTTGCACGTTTGAAATGGAAGTCGGAGATACGTGTTGAGGTGTATCGAGGAAGAAAGCCCATCCTTCGTCAGCAACCAATGGG
GCTGCTTGTTGACTTTGCTGAACACTAGTCGTAGGTGGCAGTTGTTGGTCAAAGCCAGCAAATAAATCTATTGACGGAGGGGTAGAGGAAATTGAAGGTT
CCTGCAAAGGCGACAGACTCAAGAGATCATGATGGACAGGATGAGATGTAGAGGGTGCTTCGGCTTGAACAGGTGGTGAAGATGCCACGGCTTTCTGAAC
CACAACGTCATGCAGAGTTTCTTTAGGAACAGAATGGCTGCCTACATCAACTGCTCTATGGGGAACTGATGGAGCCTGTTGGTTAAAGCCAGCAAAAAGA
TCTATTGGTGCTGCAGAATTGACCGGATGTTGCATTGACTGATCAAAGAAGTCCTGATTTGTGGAAGCCGTTGGCTGTGTTGAAACTGGCGGCTTTGCTA
CAGAGACCATGTGAACCCTTCCATGTTGCACAGATTCCCTGGTGGGAGCAGTTTGGCTGACTGAAGAGTTTATATTGCTCTGTGAGGCATACAATTGTGC
TGAATGAGCCATGGGGGGCGCAACAGACTGACGATTTACAGCAGAATTCACTGGCTTTTCTGTAGGTGCATCAGGTAAGGCACCTGAATCAACT