Detailed information on CNT3099728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574636Oryza rufipogonOryza barthii75.872.8698.6714forward
CNT30603565Oryza rufipogonOryza punctata66.4521.9988.66626forward

Expression of CNT3099728

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MRLYITPYGYKVLAPPIESGCDDIFALICWPGGVFGSGCGKGCGGELGSGCGKGCGGALGSGCGKG*

>peptide 2 (32 aa)
MAMCIYMQSKNGNSARLFTTISLSVLSKHIEE*

>peptide 3 (78 aa)
MVVGLVAVKAVVAAAVVAEVVVVVVAVAVAVGVVVAVDLGLAGAMVAAVALGLEAAVTCAVALLTSAPDELQQEDHQPS

>peptide 4 (71 aa)
QTSHICIKCVHKEVNRCVLTYTKISGYKPVQYIANLHLKQKKKDNIANLSTWQCVYTCNLKMVTQHAYLQQ*

Sequence

>CNT3099728
GACAGACTTCACACATATGCATCAAATGTGTACACAAAGAGGTAAATAGGTGTGTATTAACATACACAAAAATATCAGGGTACAAGCCAGTGCAGTACAT
AGCAAACCTCCATCTCAAACAAAAAAAAAAAGATAACATAGCAAACCTATCAACATGGCAATGTGTATATACATGCAATCTAAAAATGGTAACTCAGCAC
GCTTATTTACAACAATAAGCCTCTCCGTACTATCAAAACATATAGAAGAATAGGCTAAACAATGGCATGAGATTGTATATTACACCGTATGGATATAAAG
TTCTGGCTCCACCAATAGAATCCGGCTGTGATGATATCTTTGCATTAATTTGTTGGCCAGGAGGCGTGTTCGGGTCTGGTTGCGGCAAAGGCTGTGGCGG
CGAGTTAGGGTCTGGTTGCGGCAAAGGCTGTGGTGGTGCGTTAGGGTCAGGTTGCGGTAAAGGTTGAGGGTTGTTTGGGTCTGGTTGCGGCAAAGGTTGT
GGTGGCGCGTTCGGGTCAGGTTGTGGCAGAGGCAGTGGTGGCGCGTTTGGGTCTGGCTGCGGCAGAGGTTGCGGGTTGTTTGGGTTAGGCTGCGGCAGAG
GCAACGGCGGAGCGTTCGGGTCTGGCTGAGGTAAAGGCTGGGGATTTGGGTTTGGCTGTGGTAACGGTTGGGGGTTTGGGTTCGGCTGCGGGCCGGGTTG
CGGTAATGGTTGTGGGCCTGGTAGCGGTAAAGGCTGTGGTTGCGGCTGCGGTTGTGGCAGAGGTTGTGGTTGTGGTTGTGGCTGTGGCTGTGGCTGTGGG
AGTGGTTGTGGCTGTGGATTTGGGTTTGGCTGGGGCAATGGTTGCGGCTGTGGCCTTGGGTTTGGAAGCTGCTGTAACTTGCGCTGTGGCCCTACTAACC
TCGGCACCTGATGAGTTGCAGCAGGAAGATCATCAACCAAGC