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Detailed information on CNT3099709


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 3e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702366Oryza rufipogonQuercus lobata9.9221.6999.54216reverse complement
CNT30378673Oryza rufipogonArabidopsis thaliana17.0429.7598.92371reverse complement
CNT30283003Oryza rufipogonChenopodium quinoa17.0438.8598.92371reverse complement
CNT3020470Oryza rufipogonCitrullus lanatus9.6538.9698.57210reverse complement
CNT30406993Oryza rufipogonBeta vulgaris5.2429.4689.47114reverse complement
CNT30504586Oryza rufipogonNicotiana attenuata17.0421.0797.3371forward
CNT30162096Oryza rufipogonPistacia vera5.7442.09100125reverse complement
CNT30306129Oryza rufipogonTriticum aestivum17.0429.8100371forward
CNT30219690Oryza rufipogonHordeum vulgare17.0454.16100371reverse complement
CNT30396495Oryza rufipogonTriticum turgidum17.0423.03100371forward
CNT30437461Oryza rufipogonAegilops tauschii11.6794.0799.61254reverse complement
CNT30245388Oryza rufipogonAvena sativa6.8443.06100149reverse complement
CNT30660235Oryza rufipogonTriticum dicoccoides1739.3298.38370reverse complement
CNT30605073Oryza rufipogonGossypium raimondii17.0424.4198.11371reverse complement
CNT30626675Oryza rufipogonDaucus carota10.9334.6499.58238reverse complement
CNT30682696Oryza rufipogonTriticum urartu17.0441.83100371reverse complement
CNT30720411Oryza rufipogonTriticum spelta10.5263.79100229reverse complement
CNT30346087Oryza rufipogonEragrostis tef17.0435.88100371forward
CNT30359771Oryza rufipogonLactuca sativa17.0435.599.46371forward
CNT30434609Oryza rufipogonPapaver somniferum8.7734.698.95191forward
CNT30571801Oryza rufipogonVitis vinifera17.0428.4399.73371reverse complement
CNT3057237Oryza rufipogonAmborella trichopoda14.0122.194.1305forward
CNT3038287Oryza rufipogonCucumis melo17.0424.7599.19371reverse complement
CNT30331625Oryza rufipogonDioscorea rotundata10.7573.5897.44234forward
CNT30557400Oryza rufipogonPanicum hallii17.0427.0497.84371forward
CNT3039925Oryza rufipogonMarchantia polymorpha11.5350.695.22251forward

Expression of CNT3099709

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MGPYDSQRMMRGKADTSQVMLSTVKRLRGKIYKRLPRLATKLVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLPNS*

>peptide 2 (55 aa)
MLYLSLPMNPLHINIISVLACQQAVETFVIPNLRREGSEVSECGKPAPPRDIAGR*

>peptide 3 (70 aa)
MPSLGSVARTLIACFKIGHTACDLLLISKSTRDSISFPLHYVLTFPAMRERLYPWSIGTNPVENTNPTSS*

Sequence

>CNT3099709
GCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACA
GGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGG
TAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCC
GACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTACAGATTGTAACCACATTTTAG
CTTGACCCGTGAAATACATGGTGGAGTAATCTTTCCAAGTAGTGTAAGGAGTGTGGAACATAAGAAAATATTTATCGCAATTCTTCTTCCACCATCAAAG
ATAGGAAAATCTGGCCTATTGGGTGCCGATCCACTCGATCCTATGCTATGCATTTGTGACCAAGGCGAGGTAAGATCATGAATACAAGATGGCGATGAGT
CATGCCAAGTTTGGGGAGTGTTGCTCGTACCCTCATTGCATGTTTTAAAATAGGGCATACTGCCTGTGATTTACTATTGATTTCCAAGTCGACACGAGAT
TCTATTTCTTTCCCTCTACACTATGTACTTACTTTTCCGGCTATGCGAGAGAGACTTTATCCTTGGTCTATAGGCACAAATCCAGTAGAAAATACCAATC
CAACTTCCTCCTAAAATCACTTCTAACAGGCGAGCGTGACTTGTGCGCTTTTTCGTTAAATCGAGCAAATGGATGTGTTTTTCCAGCCACTGAGTATCTA
GGGTCATTCCCTTTACCAAACATTGGAGTCGCTGCTCGCTCGAAAGCTTTTGCTTTCTTCGGTACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTAGGGTCATTCCCTTTACCAAACATTGGAG
TCGCTGCTCGCTCGAAAGCTTTTGCTTTCTTCGGTACTGGTACTTCGGAATCCGGTGCCAAGCTTTCTGATCTCTCTCCGTGAGGAGAAAATTCCTAGGA
TTGATGCTCGATTAGATAGTTGATTTGATTTTCTATTACTAGAGCTTGGCAGTGAAGACAGTGCAGCAGATTTTCGCACTACCGGAATGGGTCCTTATGA
TTCTCAAAGAATGATGAGGGGCAAGGCTGATACCTCGCAGGTGATGCTATCAACTGTGAAGAGGCTTCGAGGCAAGATCTACAAACGTCTGCCTCGGCTC
GCTACCAAACTCGTAAGCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGGCTCGCTACCAAACTCGTAAGCAAACAGCGGGACGTGAAGCAAGCCAGCTACAGGTGCTAGACGGCTTTCTCGTCA
AAGAGCGTTCTATTTCTAGGGTCGGCCGTAAAAGACGGATTTGTTTATAACTGACCCATTTATAATATACCACCAAACTAGTCACTCATGGGAGGCTTCA
CTTGTGAACTACAATTCCCGTACTACGTAGTATGATTGGTTGCTCAACTGCCCCTTAAACGAAGAAGACCCCTGGGCCGCCTTGCGAAATACTTACTGCT
CAAAAGCGAAGAAATTAAAATGCTTTACCTCTCTCTTCCGATGAATCCACTTCACATAAACATAATAAGTGTTTTGGCATGCCAGCAAGCGGTTGAGACT
TTCGTTATTCCAAATTTACGAAGGGAAGGTTCCGAGGTATCGGAATGTGGTAAGCCAGCTCCACCTAGGGACATCGCCGGACGGTAGGCATCGGTTGCTC
TAAAACTTCTCACCTGGTTTTCCTATTGTCAACTTTCCTTACGCAAGCGGTCAGTAAAGAAAAGCCGAGTCGAGTAC