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Detailed information on CNT3099658


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LGE3|FLP1_ORYSJ, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30457183Oryza rufipogonSaccharum spontaneum36.7422.7488.14194forward
CNT30682213Oryza rufipogonTriticum urartu22.5410.6884.03119forward
CNT30574804Oryza rufipogonOryza barthii34.4735.999.45182forward
CNT30115632Oryza rufipogonOryza nivara34.4723.95100182forward

Expression of CNT3099658

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSYMWTEEKAEKSAGREMRSREPRLWNWKREGSS*

>peptide 2 (39 aa)
MKDEDEDEDGDEERMIACMHASLYIGQFRRRRRGRSRGS*

Sequence

>CNT3099658
ATAATTATTAAAGACCTCTATATATATGCATCAGCCACACTCACTCATGTACATGATACACATACAAGTAAGCAATTGATATAACACACTGCTGATAATT
AATACCCACCCACAAGGTAATAAACCAAATCGATCAGCGACGACACATATGTATACCACTACTCATCACTCTCCATGAACTCTCACACAGTCACACACAC
ACAGTCATAAGAAGTATAATAAATTCACACACACCACAACAAAGATGAAAGACGAAGACGAAGACGAAGACGGAGACGAAGAGAGAATGATAGCCTGCAT
GCATGCAAGCCTATACATAGGTCAATTTAGGCGTCGACGACGCGGAAGGAGTCGCGGTTCTTGACGACGATGTCGTACATGTGGACGGAGGAGAAGGCGG
AGAAGTCGGCGGGGAGGGAGATGAGGTCGAGGGAGCCACGCTTGTGGAACTGGAAGAGGGAGGGGTCCTCGTAGTAGCGCTCCCACCCGAGCGCCGTCAG
CCGCGCCTCCAGCGCCGCGTACGACGAC