Detailed information on CNT3099654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690610Oryza rufipogonOryza sativa10051.08100426forward
CNT30185545Oryza rufipogonSecale cereale21.8345.3789.2593forward
CNT30353440Oryza rufipogonEragrostis tef25.598.3384.4109reverse complement
CNT30595519Oryza rufipogonOryza meridionalis47.8910099.51204forward
CNT30369233Oryza rufipogonOryza glumipatula71.610099.34305forward
CNT30574824Oryza rufipogonOryza barthii49.0610099.52209forward
CNT30497582Oryza rufipogonDigitaria exilis48.5999.0489.37207forward
CNT30603436Oryza rufipogonOryza punctata47.8980.6396.08204forward
CNT30550503Oryza rufipogonOryza brachyantha47.8943.9793.63204forward

Expression of CNT3099654

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNLIDNMIWSCVQSSFPQPKKMSTSIYFV*

Sequence

>CNT3099654
ATTTAGACTGTCGAATGTATCTCAACGCACTATAAATTATAAAATGGAATTGCATATGCTTTTATACAATCAAACAAGTTAGATCTAAATTATAAAAAGT
ACCAACTATGTATGGTAAGTAAACCCAAGTTCCACAGTTGTGATCACAATGCAAATGATACGACAGATAAAGAAAGAACAGCATAACAAGACATATAACT
GAGATAAACTTGCAGCTCATTACCTCATAATGAATTTGATTGATAATATGATCTGGTCGTGTGTCCAAAGTTCCTTTCCTCAACCAAAAAAAATGAGCAC
CTCTATCTATTTTGTGTAGTCCTGCTAGCCTGAGGACACAGCCTCCTGCCTCAAGAACAACATTCTCTGCTTTTAGAAGGACGTCAGTACGAGGGCTTCT
GCCAATTGGCACAGATGGGCAATCCT