Detailed information on CNT3099634


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39950|NLTP_HELAN, E-value = 9e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690614Oryza rufipogonOryza sativa4394.68100338reverse complement
CNT30222192Oryza rufipogonHordeum vulgare10.4327.2491.4682forward
CNT30107025Oryza rufipogonOryza longistaminata50.5143.8791.18397forward
CNT30115655Oryza rufipogonOryza nivara48.8559.63100384forward

Expression of CNT3099634

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MPPQHALGTVPPACTYGRHGISVLYTAEHEIAARTAVGGATTAATSTTTTASVAHLGAMSAKLASLSLCCCVRTLLCSLQPT*

>peptide 2 (59 aa)
GMSFPVHVKRVHMHVQKFSLILSHTVHTADLQNNGRLTQFTWRTSGPKLAQALHNNTTL*

>peptide 3 (54 aa)
RNVFSRACEEGSYACSEVQLDTITHSTYCRFAEQWTVDTVHMENIRTKASTGVT*

>peptide 4 (34 aa)
MVLMTFYSPLVREARAHTYASGRRCTWRGARRRG*

Sequence

>CNT3099634
TCGGAATGTCTTTTCCCGTGCATGTGAAGAGGGTTCATATGCATGTTCAGAAGTTCAGCTTGATACTATCACACACAGTACATACTGCAGATTTGCAGAA
CAATGGACGGTTGACACAGTTCACATGGAGAACATCAGGACCAAAGCTAGCACAGGCGTTACATAATAACACCACCTTATAAAGTGCACAATATAGCTCC
ACCATCGCCCAAGCGACACTATAGTAGGAACTGTGGAGACATACGATCCCTAAACTGCTAAACACCACAGAGGAAGAAAGGGATCGATTTTCGTAAAGCT
TAACTAGCTAGCTTAATTTGATGGTACTAATGACATTTTATTCTCCTCTCGTACGGGAGGCGCGGGCACACACGTACGCATCAGGGAGACGTTGCACTTG
GAGGGGAGCGCGGCGGCGCGGGTGATGTAGGGGCCCCCGGAGGCGCCGTTGGCGACGTTCTTGAGGCAGCCGCAGATGGTGCGGCGATCGGGGGTGTTGT
TGGCGGCGGCGAGCAGGCTCTGAATGCCGCCGCAGCACGCCCTGGGCACCGTGCCCCCCGCCTGCACGTACGGCAGGCACGGCATCAGCGTGTTGTACAC
CGCCGAGCACGAGATCGCCGCGCGCACCGCCGTCGGCGGCGCCACCACGGCCGCCACCAGCACCACCACCACCGCCAGCGTCGCGCACCTTGGAGCCATG
TCAGCTAAGCTAGCTAGTCTCAGTCTTTGCTGCTGTGTACGTACGTTGTTGTGCTCTCTACAACCTACGTGAACACTGAAAGACAG