« Back to Oryza rufipogon search


Detailed information on CNT3099633


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552314Oryza rufipogonOryza glaberrima10058.9999.72725forward
CNT30575063Oryza rufipogonOryza barthii98.7695.0997.35716forward

Expression of CNT3099633

Peptides detected in this lncRNA

>peptide 1 (52 aa)
VEVEVIFFSEVSKQHVLSEEYVLFAIHVSRHIGDIQSIQPSSEIHRVNVRQL*

Sequence

>CNT3099633
CGTCGAGGTCGAGGTCATCTTCTTCAGCGAAGTCTCCAAGCAGCATGTCCTCAGTGAAGAGTACGTCTTGTTCGCCATTCATGTAAGCCGGCACATCGGA
GATATCCAGAGCATCCAGCCCAGCTCGGAAATCCATCGGGTCAATGTCCGGCAGCTGTAGACCGCGCAGTATATCCTTGTAGAACTCTGGGTCATCCGGC
AGCTCGGCGGTCTCGTTGGTAGCCTCCACCAGGAGGGGAGTTGCAGCTTGCTCCGGCAGCGGCGGCGACTCTGGCTTTGGAGCTGGCTTGGTGGCTTCGA
GCACAGACGACGGCGAAGGGTGGGCGAATGGCGCGGCAGAAGTCGAGGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGGTGAGGCAGA
GGAGGCCACACCACGGCGGCGCTTCTCTTCGGCGAAGTTGCGGGAGGCAGCGACGGTGGACGCCGGAGAGGCCTGCTTCGTCGACGAAGCTGGCTTGCCA
ATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGCCGGCGTCCTCGTCGTCGTCAGAGTCGGAGTCCGTCGCGTCAGGGTCCTCGAACACGACGCGGA
CGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGGCACATGGGGCCTGGAGAAAGCAGCAGAGGGTTTAAGGCCAAACCCGGATAGCCTCTTCGTCTT
CGGCTTCTTCGCCATCACCTTCTTG