Detailed information on CNT3099630


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDN0|DNJ20_ARATH, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293409Oryza rufipogonTriticum aestivum25.634.0188.03117forward
CNT30661152Oryza rufipogonTriticum dicoccoides45.9530.5286.19210forward
CNT30574744Oryza rufipogonOryza barthii55.850.699.22255forward

Expression of CNT3099630

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MALLFSLCFHFRFASTGARALLLPLSLSLSLSFFFGFLLGL

>peptide 2 (61 aa)
AVVGGPAAGVGERLVGLLHLDEAAGVLGGGVGRRDVRMVLARHPPVGRADLVEGALRRDPE*

>peptide 3 (43 aa)
MGHGSSLLSMLSLSLRFHRCPCFASSSLSLSLSLLFFWVLVGFV

Sequence

>CNT3099630
CGCGGTCGTAGGTGGCCCGGCGGCTGGGGTCGGAGAGCGTCTCGTAGGCCTCCTGCACCTCGATGAAGCGGCGGGTGTTCTCGGCGGCGGCGTCGGGCGG
CGAGACGTCCGGATGGTACTTGCGCGCCATCCGCCTGTAGGCCGCGCGGACCTCGTCGAGGGTGCCCTCCGACGAGATCCCGAGTAGGTCGTACAACGTG
GGCTGCTCCGCCGTGCGCAGGGTGCCCAAGTCCGGGCGAAGGCCACGCGCTGTCTGCAGCAGCGGGCGGGGGACGCGGCCAGGGCGCAGGAAGGCAACGC
GGGCGGAGGCAGGGGCGGCGGCGAGATGGGGCATGGCTCTTCTCTTCTCTCTATGCTTTCACTTTCGCTTCGCTTCCACCGGTGCCCGTGCTTTGCTTCT
TCCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTTTTTGGGTTCTTGTTGGGTTTGTT