CANTATAdb - search

Detailed information on CNT3099619

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005900, E-value = 1e-146

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596193	Oryza rufipogon	Oryza meridionalis	76.98	57.25	94.52	438	forward
CNT30578303	Oryza rufipogon	Oryza barthii	58.35	83	95.78	332	forward

Expression of CNT3099619

Peptides detected in this lncRNA

>peptide 1 (35 aa)
FLHTLSSLVCTREEFPGRSPIPNCGFRKRSCNLLI*

>peptide 2 (34 aa)
LFCTLCPHSCAPGKNFPVGHPFQIVASGKEVATC*

>peptide 3 (72 aa)
MLHPHPLKRDRRPRRSTLGQERPLLATSMCPVPAHVPCCVTTPGLHQPCAPCLRNCDTRARETARVGSDTIL*

>peptide 4 (65 aa)
FSAHFVLTRVHPGRISRSVTHSKLWLPEKKLQLVDMSILLILLSPRPGCYTLTPLREIDAPVDQP*

Sequence

>CNT3099619
CTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACCCATTCCAAATTGTGGCTTCCGGAAAAGAAGTTGCAACTT
GTTGATATGAGTATTCTATTAATCCTATTAAGCCCTAGGCCGGGATGTTACACCCTCACCCCCTTAAGAGAGATCGACGCCCCCGTCGATCAACCCTAGG
CCAGGAACGTCCTCTCTTGGCCACGTCCATGTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACTCCCGGTCTACACCAGCCATGCGCACCATGC
CTGCGCAACTGCGACACACGCGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCATTTTGTAACGTCCCGTCTCCCCTAGGCCGGGCCCACTTACATCTG
ATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACATATCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATATCCCGGTCG
GTCACCCATCCCAAATTGCTCCAGGCCAAGTACGCTTAACCCTGGAGTTCTTTGGAGATTGGCTTCCGG