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Detailed information on CNT3099612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369227Oryza rufipogonOryza glumipatula5281.9799.55441forward
CNT30109962Oryza rufipogonOryza longistaminata17.335098.64147forward

Expression of CNT3099612

Peptides detected in this lncRNA

>peptide 1 (52 aa)
VEVEVIFFSEVSKQHVLSEEYVLFAIHVSRHIGDIQSIQPSSEIHRVNVRQL*

Sequence

>CNT3099612
GTCGAGGTCGAGGTCATCTTCTTCAGCGAAGTCTCCAAGCAGCATGTCCTCAGTGAAGAGTACGTCTTGTTCGCCATTCATGTAAGCCGGCACATCGGAG
ATATCCAGAGCATCCAGCCCAGCTCGGAAATCCATCGGGTCAATGTCCGGCAGCTGTAGACCGCGCAGTATATCCTTGTAGAACTCTGGGTCATCCGGCA
GCTCGGCGGTCTCGTTGGTAGCCTCCACCAGGAGGGGAGTTGCAGCTTGCTCCGGCAGCGGCGGCGACTCTGGCTTTGGAGCTGGCTTGGTGGCTTCGAG
CACAGACGACGGCGAAGGGTGGGCGAATGGCGCGGCAGAAGTCGAGGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGGTGAGGCAGCG
ACGGTGGACGCCGGAGAGGCCTGCTTCGTCGACGAAGCTGGCTTGCCAATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGCCGGCGTCCTCGTCGT
CGTCAGAGTCGGAGTCCGTCGCGTCAGGGTCCTCGAACACGACGCGGACGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGGCACATGGGGCCTGGA
GAAAGCAGCAGAGGGTTTAAGGCCAAACCCGGATAGCCTCTTCGTCTTCGGCTTCTTCGCCATCACCTTCTTGAGGAGCATCTGCTGCTGCTTGGAAGGG
GCCATTTCTCTCTTCTTCTAACTCTTGCCGGAAAAGAACTCTAAAATTCCTCACCAAAACTGACAAAACTGAAGGGGAAAAACTCTAAAAGGGGGAAACT
TTTTTTTTCTCTTGTGCAAAAATTTGACGGAGACGAACACGAATCGAT