CANTATAdb - search

Detailed information on CNT3099595

BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 5e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30186674	Oryza rufipogon	Secale cereale	55.84	51.71	91.72	483	forward
CNT30298862	Oryza rufipogon	Triticum aestivum	55.84	48.01	92.13	483	forward
CNT30666046	Oryza rufipogon	Triticum dicoccoides	55.84	52.56	92.13	483	forward
CNT30369293	Oryza rufipogon	Oryza glumipatula	65.32	59.79	99.12	565	forward
CNT30556644	Oryza rufipogon	Panicum hallii	52.72	53.21	92.98	456	forward

Expression of CNT3099595

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTWTAQMARMLCAWIRLGLPR*

>peptide 2 (50 aa)
MAARRRRRSLAGDEVGGRRGRAGRSCRRGRAGRRPRRAARRRCGTPRRRP*

>peptide 3 (32 aa)
MRRHGSTAAAALTCRGRSWWSARPSGSKLPPG*

Sequence

>CNT3099595
ATATCATTAAGTAGCACGCAGGATTAAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACAC
ACTACCGGTACAGATCTCACCCTCTCTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTAC
CGCGTACACACACGCACACTCTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTCGCCATGGCAGCACGGCGGCGGC
GGCGCTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCG
CCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGT
AGTCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCA
GCCCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAC
CCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGGCCATGGTGGCGGCGG
CCATGTCTACCTCGCTCTGCTGCTTCAAGCTCAGCTGCTGCTGCTGGGGTGTGTGTGCGTGCTGT