CANTATAdb - search

Detailed information on CNT3099582

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690695	Oryza rufipogon	Oryza sativa	54.01	100	100	492	forward

Expression of CNT3099582

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVGSARMAAWTFLYSDSMPSASIPFLRYSLKWAWNFSGSSSAI

>peptide 2 (37 aa)
MEFVWQAEHNYINIQTAASHINKITDSSRLRIKNRKK*

>peptide 3 (36 aa)
MPVATCKTIQVNLNAIWSLFGRQNTIISISKRQLLT*

Sequence

>CNT3099582
GTGTAAAGCGCCCAAGGGAACTCCAGTTTAGGACAATGCAGGCAAGAAGACCTGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAACATAAAACAC
TGACAAGTGAAGAGCCAGGCAGAACACATTTTGATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTGAGAACCAAAA
ACCGAAAGAAATAGGTTCTTTGAGCGGAGTTCAGAACATAAACAAAAATGCCTGTTGCAACTTGCAAGACTATACAGGTGAACTTAAATGCCATATGGAG
TTTGTTTGGCAGGCAGAACACAATTATATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACTGATAGCTCAAGGTTGAGAATCAAAAACCGAA
AGAAATAGGTTCTTTGAGCAGAGTGCAGAACATAAACAAAAATGCCTGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCCATATGGAGTTTGTTTG
GCAGCATAAGATGAAACTACTGTGATAAGGCTACTCTCTCACTCGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCGGAGGAGTTGAGAGCATTCA
ATCTTTCGACGAGACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTTGAGGTTGTATCTGCAGCAAAGAGATGGCAAGTTAGTTACATCATACATGGACAT
CACAAATAATCTTTACGAAAATCATCAGCCAGCTTAATATACCTCTTGTGGGTAGCCGGTTCCTTCTTGGTCGATTTGGCCATGGTAGGATCGGCGCGGA
TGGCAGCATGGACCTTCTTGTACAGTGATTCCATGCCATCAGCGTCAATTCCCTTCTTGAGGTACTCACTAAAGTGGGCTTGGAATTTCTCAGGTTCCTC
CTCAGCCATAG