Detailed information on CNT3099578


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007156, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690372Oryza rufipogonOryza sativa18.3929.2586.85251forward
CNT30369405Oryza rufipogonOryza glumipatula45.27101.3195.31618forward
CNT30109232Oryza rufipogonOryza longistaminata18.3233.7492250forward
CNT30574672Oryza rufipogonOryza barthii57.1459.6897.95780forward

Expression of CNT3099578

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVSFRPDSGATGVGERRWRGVGDVVARVMAGLE*

>peptide 2 (34 aa)
MIEDSNSPWMGMGSGGLAELSAQIVARLHRKHPAR

>peptide 3 (43 aa)
MNVGVDDGIMGSNHEITEVLFDGVSVLYVCKYYIIVNHFEELD*

>peptide 4 (45 aa)
MSIIYVFFNINVSAQQICFSAPSVFWRQLSNSCEIINSYTVPVAI*

>peptide 5 (43 aa)
MVMVAVVATPRCTMEEVVQMAGSVMARNTKNSVDRPRTASISN*

>peptide 6 (91 aa)
EPCGAEAGTASSGFTGMTARRRWVEVGRLPRARCHGFVPAGLRCHGSGGAALAWRRRRRGAGDGGVGVAAMVMRRRGLWWRPLTLGPRLAW*

Sequence

>CNT3099578
GAGCCATGTGGAGCGGAGGCCGGGACGGCGAGCAGTGGCTTCACCGGCATGACGGCGAGACGACGATGGGTTGAAGTAGGCCGGCTCCCCCGTGCGCGCT
GCCATGGTTTCGTTCCGGCCGGACTCCGGTGCCACGGGAGTGGGGGAGCGGCGTTGGCGTGGCGTCGGCGACGTCGTGGCGCGGGTGATGGCGGGGTTGG
AGTAGCAGCAATGGTGATGCGGCGCCGAGGGTTGTGGTGGCGGCCACTAACCCTAGGCCCGCGCCTGGCATGGTGATGGTGGCAGTGGTGGCGACTCCTC
GTTGTACGATGGAGGAGGTGGTGCAGATGGCGGGCTCGGTCATGGCGAGGAATACCAAGAACAGCGTCGATCGGCCAAGAACGGCGTCGATAAGTAATTG
AAGGTATCGACATGTATTGTGCTCCGGCCCGTTGCTGATTGATTCCAGGTAAGTTTGGCAAAGCGTCCATGACTCATATTGTCATATTGCCTCCATGACA
ACAAGCGAGGGGAAATGCTTTAGGTGAATAGCCGGAGGAAGTATCCGGATGATGTATTTGCTCCTGGTCTAGGTCCCAAGTACGACGGAGAGGCCGGCGC
AGATTAGAGCTGATCTATAGGTAATCACATATGTCCATAATATATGTTTTTTTTAATATAAATGTTTCCGCACAACAAATTTGTTTCAGTGCTCCCTCAG
TTTTCTGGCGCCAACTTTCCAATAGTTGTGAGATAATTAATTCATATACTGTACCTGTTGCTATATAAGAGCAAGTTCAATAGTATAGCCAACTACTAGC
TCCAATTTATCTATAGCCAATCTAATAGCCCATTCATACAATAGTTACATACTACACTATTAATATCTAGTCCCACCTGTCATAGACACACTGCGTCTTG
GAGTCCGTGCTACAGCTGGCTACAAATCTGTAGCCCGTTGCTCTTCTCTCTCTTGATTTATCTTCGTAAAATATGTTTGTAGCTGGCTTATAGCCTGCCA
TTGTACCTGCTCTAACGCAGCAAAGTGTGATGAATGTTGGTGTTGATGATGGGATCATGGGAAGTAACCATGAGATAACAGAGGTATTGTTCGATGGAGT
AAGTGTATTATATGTATGTAAATATTATATTATTGTAAATCATTTTGAGGAGCTAGACTAGCGTGCCTTATTAACAAGGAGATATGTACCATTACATGAT
GATTAACATATAAATCTGTAGCTACATGGAATTAAGGTAGTGGAGCAGAGGAGGAAGGATGATAGAAGACTCCAATTCTCCATGGATGGGAATGGGATCA
GGTGGCCTTGCAGAACTCTCCGCCCAGATCGTCGCACGCCTCCATCGGAAACACCCTGCGCGCAG